A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria

Evaluation of Plasmodium vivax malaria recurrence in Brazil

(2019) André Daher et al.   MALARIA JOURNAL

Estimating Relatedness Between Malaria Parasites

(2019) Aimee R. Taylor et al.   GENETICS

The effect of chloroquine dose and primaquine on Plasmodium vivax recurrence: a WorldWide Antimalarial Resistance Network systematic review and individual patient pooled meta-analysis

(2018) Robert J Commons et al.   LANCET INFECTIOUS DISEASES

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics

(2018) Sarah Auburn et al.   Nature Communications

Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development

(2018) Ernest Diez Benavente et al.   Scientific Reports

Antimalarial Drug Resistance: A Threat to Malaria Elimination

(2017) Didier Menard et al.   Cold Spring Harbor Perspectives in Medicine

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites

(2017) Hsiao-Han Chang et al.   PLoS Computational Biology

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations

(2017) Ernest Diez Benavente et al.   PLoS Genetics

Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax

(2017) Thais C. de Oliveira et al.   PLoS Neglected Tropical Diseases

VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations

(2017) Hidayat Trimarsanto et al.   PLoS Neglected Tropical Diseases

Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections

(2017) Zuleima Pava et al.   PLoS One

Global Epidemiology of Plasmodium vivax

(2016) Rosalind E. Howes et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

(2016) Daniel N Hupalo et al.   NATURE GENETICS

Genomic analysis of local variation and recent evolution in Plasmodium vivax

(2016) Richard D Pearson et al.   NATURE GENETICS

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Selective sweep suggests transcriptional regulation may underliePlasmodium vivaxresilience to malaria control measures in Cambodia

(2016) Christian M. Parobek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia

(2015) Sisay Getachew et al.   PLoS One

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections

(2015) Mary Lynn Baniecki et al.   PLoS Neglected Tropical Diseases

Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia

(2015) David J. Winter et al.   PLoS Neglected Tropical Diseases

Using Mitochondrial Genome Sequences to Track the Origin of Imported Plasmodium vivax Infections Diagnosed in the United States

(2014) Priscila T. Rodrigues et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia

(2014) Shannon Takala-Harrison et al.   JOURNAL OF INFECTIOUS DISEASES

Global extent of chloroquine-resistant Plasmodium vivax: a systematic review and meta-analysis

(2014) Ric N Price et al.   LANCET INFECTIOUS DISEASES

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

(2014) Mark D. Preston et al.   Nature Communications

A High Resolution Case Study of a Patient with Recurrent Plasmodium vivax Infections Shows That Relapses Were Caused by Meiotic Siblings

(2014) Andrew Taylor Bright et al.   PLoS Neglected Tropical Diseases

The changing epidemiology of malaria elimination: new strategies for new challenges

(2013) Chris Cotter et al.   LANCET

Plasmodium vivax Population Structure and Transmission Dynamics in Sabah Malaysia

(2013) Noor Rain Abdullah et al.   PLoS One

Random forests for genomic data analysis

(2012) Xi Chen et al.   GENOMICS

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

(2012) Magnus Manske et al.   NATURE

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Vivax Malaria: A Major Cause of Morbidity in Early Infancy

(2009) Jeanne R. Poespoprodjo et al.   CLINICAL INFECTIOUS DISEASES

Adverse Pregnancy Outcomes in an Area Where Multidrug‐ResistantPlasmodium vivaxandPlasmodium falciparumInfections Are Endemic

(2008) Jeanne Rini Poespoprodjo et al.   CLINICAL INFECTIOUS DISEASES

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

(2008) Rachel Daniels et al.   MALARIA JOURNAL

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

Multidrug-Resistant Plasmodium vivax Associated with Severe and Fatal Malaria: A Prospective Study in Papua, Indonesia

(2008) Emiliana Tjitra et al.   PLOS MEDICINE