Genomic analysis of local variation and recent evolution in Plasmodium vivax

Expression of Plasmodium vivaxcrt-oIs Related to Parasite Stage but NotEx VivoChloroquine Susceptibility

(2015) Zuleima Pava et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Using Amplicon Deep Sequencing to Detect Genetic Signatures ofPlasmodium vivaxRelapse

(2015) Jessica T. Lin et al.   JOURNAL OF INFECTIOUS DISEASES

Genetic architecture of artemisinin-resistant Plasmodium falciparum

(2015) Olivo Miotto et al.   NATURE GENETICS

Uncovering the transmission dynamics ofPlasmodium vivaxusing population genetics

(2015) Alyssa E. Barry et al.   Pathogens and Global Health

Plasmodium vivax Diversity and Population Structure across Four Continents

(2015) Cristian Koepfli et al.   PLoS Neglected Tropical Diseases

Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia

(2015) David J. Winter et al.   PLoS Neglected Tropical Diseases

Next-Generation Sequencing of Plasmodium vivax Patient Samples Shows Evidence of Direct Evolution in Drug-Resistance Genes

(2015) Erika L. Flannery et al.   ACS Infectious Diseases

Single-cell genomics for dissection of complex malaria infections

(2014) S. Nair et al.   GENOME RESEARCH

Global extent of chloroquine-resistant Plasmodium vivax: a systematic review and meta-analysis

(2014) Ric N Price et al.   LANCET INFECTIOUS DISEASES

A High Resolution Case Study of a Patient with Recurrent Plasmodium vivax Infections Shows That Relapses Were Caused by Meiotic Siblings

(2014) Andrew Taylor Bright et al.   PLoS Neglected Tropical Diseases

Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

(2013) Sarah Auburn et al.   PLoS One

Whole Genome Sequencing of Field Isolates Reveals a Common Duplication of the Duffy Binding Protein Gene in Malagasy Plasmodium vivax Strains

(2013) Didier Menard et al.   PLoS Neglected Tropical Diseases

De Novo Assembly of a Field Isolate Genome Reveals Novel Plasmodium vivax Erythrocyte Invasion Genes

(2013) James Hester et al.   PLoS Neglected Tropical Diseases

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

(2012) Magnus Manske et al.   NATURE

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

(2012) Shin-Ichiro Tachibana et al.   NATURE GENETICS

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data

(2012) Sarah Auburn et al.   PLoS One

Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax

(2012) Ernest R. Chan et al.   PLoS Neglected Tropical Diseases

A Long Neglected World Malaria Map: Plasmodium vivax Endemicity in 2010

(2012) Peter W. Gething et al.   PLoS Neglected Tropical Diseases

Plasmodium vivax Recurrence Following Falciparum and Mixed Species Malaria: Risk Factors and Effect of Antimalarial Kinetics

(2011) N. M. Douglas et al.   CLINICAL INFECTIOUS DISEASES

The First Plasmodium vivax Relapses of Life Are Usually Genetically Homologous

(2011) Mallika Imwong et al.   JOURNAL OF INFECTIOUS DISEASES

Development and evaluation of a prototype non-woven fabric filter for purification of malaria-infected blood

(2011) Zhi-Yong Tao et al.   MALARIA JOURNAL

Determinants of relapse periodicity in Plasmodium vivax malaria

(2011) Nicholas J White   MALARIA JOURNAL

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

GeneDB--an annotation database for pathogens

(2011) F. J. Logan-Klumpler et al.   NUCLEIC ACIDS RESEARCH

The global distribution of the Duffy blood group

(2011) Rosalind E. Howes et al.   Nature Communications

Tracking Origins and Spread of Sulfadoxine-ResistantPlasmodium falciparum dhpsAlleles in Thailand

(2010) Md Tauqeer Alam et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people

(2010) D. Menard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes

(2010) N. V. Dharia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Systems-Based Analysis of Plasmodium vivax Lifecycle Transcription from Human to Mosquito

(2010) Scott J. Westenberger et al.   PLoS Neglected Tropical Diseases

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Disruption of aPlasmodium falciparumMultidrug Resistance-associated Protein (PfMRP) Alters Its Fitness and Transport of Antimalarial Drugs and Glutathione

(2009) Dipak Kumar Raj et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Amplification ofpvmdr1Associated with Multidrug‐ResistantPlasmodium vivax

(2008) R. Suwanarusk et al.   JOURNAL OF INFECTIOUS DISEASES

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

(2008) Jane M. Carlton et al.   NATURE

The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria

(2008) Jean-Marie Pagès et al.   NATURE REVIEWS MICROBIOLOGY

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive microsatellite diversity in the human malaria parasite Plasmodium vivax

(2007) Nadira D. Karunaweera et al.   GENE