Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax

Out of Africa: origins and evolution of the human malaria parasites Plasmodium falciparum and Plasmodium vivax

(2017) Dorothy E. Loy et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Mosquito Vectors and the Globalization of Plasmodium falciparum Malaria

(2016) Alvaro Molina-Cruz et al.   Annual Review of Genetics

Infection of laboratory colonies of Anopheles mosquitoes with Plasmodium vivax from cryopreserved clinical isolates

(2016) Kathryn Shaw-Saliba et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

(2016) Daniel N Hupalo et al.   NATURE GENETICS

Genomic analysis of local variation and recent evolution in Plasmodium vivax

(2016) Richard D Pearson et al.   NATURE GENETICS

Mitochondrial DNA from the eradicated EuropeanPlasmodium vivaxandP. falciparumfrom 70-year-old slides from the Ebro Delta in Spain

(2016) Pere Gelabert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The identification of malaria in paleopathology—An in-depth assessment of the strategies to detect malaria in ancient remains

(2015) Raffaella Bianucci et al.   ACTA TROPICA

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research

(2015) Jane M. Carlton et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Malaria in the Americas: Trends from 1959 to 2011

(2015) Keith H. Carter et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

The biology ofPlasmodium vivaxexplored through genomics

(2015) Zunping Luo et al.   Annals of the New York Academy of Sciences

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity

(2015) Craig W. Duffy et al.   BMC GENOMICS

Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites

(2015) Hanif Samad et al.   PLoS Genetics

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections

(2015) Mary Lynn Baniecki et al.   PLoS Neglected Tropical Diseases

Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia

(2015) David J. Winter et al.   PLoS Neglected Tropical Diseases

Next-Generation Sequencing of Plasmodium vivax Patient Samples Shows Evidence of Direct Evolution in Drug-Resistance Genes

(2015) Erika L. Flannery et al.   ACS Infectious Diseases

Using Mitochondrial Genome Sequences to Track the Origin of Imported Plasmodium vivax Infections Diagnosed in the United States

(2014) Priscila T. Rodrigues et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Emerging Plasmodium vivax resistance to chloroquine in South America: an overview

(2014) Lígia Antunes Gonçalves et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity

(2014) Victor A. Mobegi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking malaria parasites in the eradication era

(2014) Marcelo U. Ferreira et al.   TRENDS IN PARASITOLOGY

A High Resolution Case Study of a Patient with Recurrent Plasmodium vivax Infections Shows That Relapses Were Caused by Meiotic Siblings

(2014) Andrew Taylor Bright et al.   PLoS Neglected Tropical Diseases

Epidemiology of Disappearing Plasmodium vivax Malaria: A Case Study in Rural Amazonia

(2014) Susana Barbosa et al.   PLoS Neglected Tropical Diseases

Long term persistence of clonal malaria parasite Plasmodium falciparum lineages in the Colombian Pacific region

(2013) Diego F Echeverry et al.   BMC GENETICS

Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis

(2013) Christian Frech et al.   BMC GENOMICS

The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas

(2013) Jesse E. Taylor et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

(2013) Sarah Auburn et al.   PLoS One

Whole genome sequencing analysis of Plasmodium vivax using whole genome capture

(2012) A Bright et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

African Plasmodium vivax: Distribution and origins

(2012) Richard Culleton et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population

(2012) Hsiao-Han Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Paleopathology in South American Mummies: A Review and New Findings

(2012) Enrique Gerszten et al.   PATHOBIOLOGY

Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax

(2012) Ernest R. Chan et al.   PLoS Neglected Tropical Diseases

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

ABC transporters involved in drug resistance in human parasites

(2011) Philippe Leprohon et al.   Essays in Biochemistry

The Origins of African Plasmodium vivax; Insights from Mitochondrial Genome Sequencing

(2011) Richard Culleton et al.   PLoS One

Plasmodium falciparum Accompanied the Human Expansion out of Africa

(2010) Kazuyuki Tanabe et al.   CURRENT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes

(2010) N. V. Dharia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Single-Nucleotide Polymorphisms in the crt-o and mdr1 Genes of Plasmodium vivax among Chloroquine-Resistant Isolates from the Brazilian Amazon Region

(2009) P. Orjuela-Sanchez et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Determinants of In Vitro Drug Susceptibility Testing of Plasmodium vivax

(2008) B. Russell et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

(2008) Jane M. Carlton et al.   NATURE

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence

(2008) Daniel E Neafsey et al.   GENOME BIOLOGY