The coincidence of ecological opportunity with hybridization explains rapid adaptive radiation in Lake Mweru cichlid fishes

A Combinatorial View on Speciation and Adaptive Radiation

(2019) David A. Marques et al.   TRENDS IN ECOLOGY & EVOLUTION

Multiple colonizations, hybridization and uneven diversification in Cyrtandra (Gesneriaceae) lineages on Hawai'i Island

(2019) Melissa A. Johnson et al.   JOURNAL OF BIOGEOGRAPHY

Speciation in Howea palms occurred in sympatry, was preceded by ancestral admixture, and was associated with edaphic and phenological adaptation

(2019) Owen G Osborne et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence

(2018) Michael Matschiner   HYDROBIOLOGIA

Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids

(2018) Joana Isabel Meier et al.   MOLECULAR BIOLOGY AND EVOLUTION

RADpainter and fineRADstructure: Population Inference from RADseq Data

(2018) Milan Malinsky et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation in sympatry with ongoing secondary gene flow and a potential olfactory trigger in a radiation of Cameroon cichlids

(2018) Jelmer W. Poelstra et al.   MOLECULAR ECOLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Upward Adaptive Radiation Cascades: Predator Diversification Induced by Prey Diversification

(2018) Jakob Brodersen et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic divergence and the number of hybridizing species affect the path to homoploid hybrid speciation

(2018) Aaron A. Comeault et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Description of five new rheophilic Orthochromis species (Teleostei: Cichlidae) from the Upper Congo drainage in Zambia and the Democratic Republic of the Congo

(2018) FREDERIC DIETER BENEDIKT SCHEDEL et al.   ZOOTAXA

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

(2018) Iker Irisarri et al.   Nature Communications

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

(2018) Milan Malinsky et al.   Nature Ecology & Evolution

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes

(2017) Emilie J. Richards et al.   PLoS Genetics

Demographic modelling with whole-genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

(2016) Joana I. Meier et al.   MOLECULAR ECOLOGY

Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

(2015) Juliane D. Weiss et al.   PLoS One

The role of clade competition in the diversification of North American canids

(2015) Daniele Silvestro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cichlid species-area relationships are shaped by adaptive radiations that scale with area

(2014) Catherine E. Wagner et al.   ECOLOGY LETTERS

Secondary contact seeds phenotypic novelty in cichlid fishes

(2014) P. Nichols et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reconstructing Austronesian population history in Island Southeast Asia

(2014) Mark Lipson et al.   Nature Communications

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow

(2013) Mark Lipson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

GEOECODYNAMICS AND THE KALAHARI EPEIROGENY: LINKING ITS GENOMIC RECORD, TREE OF LIFE AND PALIMPSEST INTO A UNIFIED NARRATIVE OF LANDSCAPE EVOLUTION

(2012) F. P. D. COTTERILL et al.   SOUTH AFRICAN JOURNAL OF GEOLOGY

POPULATION GENOMIC TESTS OF MODELS OF ADAPTIVE RADIATION IN LAKE VICTORIA REGION CICHLID FISH

(2011) Etienne Bezault et al.   EVOLUTION

Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

(2011) M. J. Genner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Phenotypic novelty in experimental hybrids is predicted by the genetic distance between species of cichlid fish

(2009) Rike B Stelkens et al.   BMC EVOLUTIONARY BIOLOGY

THE ACCUMULATION OF REPRODUCTIVE INCOMPATIBILITIES IN AFRICAN CICHLID FISH

(2009) Rike B. Stelkens et al.   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Phenotypic divergence but not genetic distance predicts assortative mating among species of a cichlid fish radiation

(2009) R. B. STELKENS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation

(2009) Rebecca J. Rundell et al.   TRENDS IN ECOLOGY & EVOLUTION

GENETIC DISTANCE BETWEEN SPECIES PREDICTS NOVEL TRAIT EXPRESSION IN THEIR HYBRIDS

(2008) Rike Stelkens et al.   EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One