Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence

RelTime Relaxes the Strict Molecular Clock throughout the Phylogeny

(2018) Fabia U Battistuzzi et al.   Genome Biology and Evolution

Accounting for Calibration Uncertainty: Bayesian Molecular Dating as a “Doubly Intractable” Problem

(2018) Stéphane Guindon   SYSTEMATIC BIOLOGY

Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus

(2018) Madlen Stange et al.   SYSTEMATIC BIOLOGY

Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary

(2018) Michael E. Alfaro et al.   Nature Ecology & Evolution

Variation of anal fin egg-spots along an environmental gradient in a haplochromine cichlid fish

(2017) Anya Theis et al.   EVOLUTION

RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal Diversification

(2017) Jesus Lozano-Fernandez et al.   Genome Biology and Evolution

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

(2017) Huw A. Ogilvie et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tsunami-driven rafting: Transoceanic species dispersal and implications for marine biogeography

(2017) James T. Carlton et al.   SCIENCE

Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands

(2017) Olja Toljagić et al.   SYSTEMATIC BIOLOGY

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(2017)   SYSTEMATIC BIOLOGY

Evolution of the Southern Guinea Plateau: Implications on Guinea-Demerara Plateau formation using insights from seismic, subsidence, and gravity data

(2017) Jared R. Olyphant et al.   TECTONOPHYSICS

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

A new cichlid fish in the Sahara: The Ounianga Serir lakes (Chad), a biodiversity hotspot in the desert

(2016) Sébastien Trape   COMPTES RENDUS BIOLOGIES

Global plate boundary evolution and kinematics since the late Paleozoic

(2016) Kara J. Matthews et al.   GLOBAL AND PLANETARY CHANGE

Evolution of the immune system influences speciation rates in teleost fishes

(2016) Martin Malmstrøm et al.   NATURE GENETICS

Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years

(2016) Sarah J. Ivory et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Inicio del enfriamiento global del eoceno medio y expansión de ambientes con vegetación abierta en la patagonia central.

(2016) Eduardo S. Bellosi et al.   Andean Geology

Bayesian molecular clock dating of species divergences in the genomics era

(2015) Mario dos Reis et al.   NATURE REVIEWS GENETICS

Biological evidence supports an early and complex emergence of the Isthmus of Panama

(2015) Christine D. Bacon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomics of organismal diversification illuminated by adaptive radiations

(2015) Daniel Berner et al.   TRENDS IN GENETICS

Phylogenetic informativeness reconciles ray-finned fish molecular divergence times

(2014) Alex Dornburg et al.   BMC EVOLUTIONARY BIOLOGY

Acclimation of brackish water pearl spot (Etroplus suratensis) to various salinities: relative changes in abundance of branchial Na+/K+-ATPase and Na+/K+/2Cl− co-transporter in relation to osmoregulatory parameters

(2014) S. Chandrasekar et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

On the Eocene cichlids from the Lumbrera Formation: additions and implications for the Neotropical ichthyofauna

(2014) Maria C. Malabarba et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

Molecular-clock methods for estimating evolutionary rates and timescales

(2014) Simon Y. W. Ho et al.   MOLECULAR ECOLOGY

Whole-genome duplication in teleost fishes and its evolutionary consequences

(2014) Stella M. K. Glasauer et al.   MOLECULAR GENETICS AND GENOMICS

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

The fossilized birth-death process for coherent calibration of divergence-time estimates

(2014) T. A. Heath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci

(2014) Tianqi Zhu et al.   SYSTEMATIC BIOLOGY

Tsunami triggers invasion concerns

(2013) Virginia Gewin   NATURE

Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes

(2013) T. J. Near et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modelling distributions of fossil sampling rates over time, space and taxa: assessment and implications for macroevolutionary studies

(2013) Peter J. Wagner et al.   Methods in Ecology and Evolution

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

(2012) Moritz Muschick et al.   CURRENT BIOLOGY

Global continental and ocean basin reconstructions since 200Ma

(2012) M. Seton et al.   EARTH-SCIENCE REVIEWS

Origins of Shared Genetic Variation in African Cichlids

(2012) Yong-Hwee E. Loh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A multilocus molecular phylogeny of boxfishes (Aracanidae, Ostraciidae; Tetraodontiformes)

(2012) Francesco Santini et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution of ray-finned fish phylogeny and timing of diversification

(2012) T. J. Near et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From Trajectories to Averages: An Improved Description of the Heterogeneity of Substitution Rates Along Lineages

(2012) Stéphane Guindon   SYSTEMATIC BIOLOGY

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity

(2011) Laura Baldo et al.   Genome Biology and Evolution

Late Cretaceous bioconnections between Indo-Madagascar and Antarctica: refutation of the Gunnerus Ridge causeway hypothesis

(2011) Jason R. Ali et al.   JOURNAL OF BIOGEOGRAPHY

Fast and Slow Implementations of Relaxed-Clock Methods Show Similar Patterns of Accuracy in Estimating Divergence Times

(2011) Fabia U. Battistuzzi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective

(2010) Masaki Miya et al.   BMC EVOLUTIONARY BIOLOGY

Pliocene isolation of a north-west Saharan cichlid fish

(2010) M. J. Genner et al.   JOURNAL OF FISH BIOLOGY

Gymnogeophagus eocenicus, n. sp. (Perciformes: Cichlidae), an Eocene cichlid from the Lumbrera Formation in Argentina

(2010) Maria C. Malabarba et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

Bayesian Estimation of Divergence Times from Large Sequence Alignments

(2010) S. Guindon   MOLECULAR BIOLOGY AND EVOLUTION

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

A new genus and species of Heroini (Perciformes: Cichlidae) from the early Eocene of southern South America

(2010) Patricia Alano Perez et al.   Neotropical Ichthyology

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Constraints on clade ages from fossil outgroups

(2010) Matthew M. Hedman   PALEOBIOLOGY

The Chicxulub Asteroid Impact and Mass Extinction at the Cretaceous-Paleogene Boundary

(2010) P. Schulte et al.   SCIENCE

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates

(2009) D. H. E. Setiamarga et al.   Biology Letters

Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes

(2009) Francesco Santini et al.   BMC EVOLUTIONARY BIOLOGY

The root of the East African cichlid radiations

(2009) Julia Schwarzer et al.   BMC EVOLUTIONARY BIOLOGY

A new starting point for the South and Equatorial Atlantic Ocean

(2009) Maryline Moulin et al.   EARTH-SCIENCE REVIEWS

Fish community structure of the St Lucia Estuarine System under prolonged drought conditions and its potential for recovery after mouth breaching

(2009) Leon Vivier et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Sedimentological, geochemical and paleontological insights applied to continental omission surfaces: A new approach for reconstructing an eocene foreland basin in NW Argentina

(2009) C. del Papa et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini

(2009) Stephan Koblmüller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new cichlid Tremembichthys garciae (Actinopterygii, Perciformes) from the Eocene-Oligocene of eastern Brazil

(2009) Maria Claudia Malabarba   REVISTA BRASILEIRA DE PALEONTOLOGIA

A Simple Method for Bracketing Absolute Divergence Times on Molecular Phylogenies Using Multiple Fossil Calibration Points

(2008) Charles R. Marshall   AMERICAN NATURALIST

Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

(2008) Yoichiro Azuma et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae)

(2008) Wm. Leo Smith et al.   CLADISTICS

Gondwana to Asia: Plate tectonics, paleogeography and the biological connectivity of the Indian sub-continent from the Middle Jurassic through latest Eocene (166–35 Ma)

(2008) Jason R. Ali et al.   EARTH-SCIENCE REVIEWS

The Lake Tanganyika cichlid species assemblage: recent advances in molecular phylogenetics

(2008) Stephan Koblmüller et al.   HYDROBIOLOGIA

What Spaceguard did

(2008) Alan Harris   NATURE

Gondwanan break-up: legacies of a lost world?

(2008) Paul Upchurch   TRENDS IN ECOLOGY & EVOLUTION