Ancient hybridization fuels rapid cichlid fish adaptive radiations

Demographic modelling with whole-genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

(2016) Joana I. Meier et al.   MOLECULAR ECOLOGY

Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations

(2015) Matthew D. McGee et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

(2015) Juliane D. Weiss et al.   PLoS One

Reproductive Isolation of Hybrid Populations Driven by Genetic Incompatibilities

(2015) Molly Schumer et al.   PLoS Genetics

Back to Tanganyika: a case of recent trans-species-flock dispersal in East African haplochromine cichlid fishes

(2015) B. S. Meyer et al.   Royal Society Open Science

Hybrid Breakdown in Cichlid Fish

(2015) Rike Bahati Stelkens et al.   PLoS One

Female preference for male color is necessary and sufficient for assortative mating in 2 cichlid sister species

(2014) O. M. Selz et al.   BEHAVIORAL ECOLOGY

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybrid speciation through sorting of parental incompatibilities in Italian sparrows

(2014) Jo S. Hermansen et al.   MOLECULAR ECOLOGY

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Conditions when hybridization might predispose populations for adaptive radiation

(2013) O. Seehausen   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

RAxML-Light: a tool for computing terabyte phylogenies

(2012) A. Stamatakis et al.   BIOINFORMATICS

ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R

(2012) Andrei-Alin Popescu et al.   BIOINFORMATICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Correlation between Nuptial Colors and Visual Sensitivities Tuned by Opsins Leads to Species Richness in Sympatric Lake Victoria Cichlid Fishes

(2012) Ryutaro Miyagi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Repeated colonization and hybridization in Lake Malawi cichlids

(2011) Domino A. Joyce et al.   CURRENT BIOLOGY

POPULATION GENOMIC TESTS OF MODELS OF ADAPTIVE RADIATION IN LAKE VICTORIA REGION CICHLID FISH

(2011) Etienne Bezault et al.   EVOLUTION

Ancient origin and recent divergence of a haplochromine cichlid lineage from isolated water bodies in the East African Rift system

(2011) C. M. Hermann et al.   JOURNAL OF FISH BIOLOGY

Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

(2011) M. J. Genner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hawaiian angiosperm radiations of North American origin

(2010) B. G. Baldwin et al.   ANNALS OF BOTANY

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Rapid parallel adaptive radiations from a single hybridogenic ancestral population

(2010) A. G. Hudson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Phenotypic novelty in experimental hybrids is predicted by the genetic distance between species of cichlid fish

(2009) Rike B Stelkens et al.   BMC EVOLUTIONARY BIOLOGY

THE ACCUMULATION OF REPRODUCTIVE INCOMPATIBILITIES IN AFRICAN CICHLID FISH

(2009) Rike B. Stelkens et al.   EVOLUTION

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION