Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology

(2016) Eva Balsa-Canto et al.   BIOINFORMATICS

What, if anything, are hybrids: enduring truths and challenges associated with population structure and gene flow

(2016) Zachariah Gompert et al.   Evolutionary Applications

Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes

(2016) Joseph A. McGirr et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genetic architecture of novel trophic specialists: larger effect sizes are associated with exceptional oral jaw diversification in a pupfish adaptive radiation

(2016) Christopher H. Martin et al.   MOLECULAR ECOLOGY

Demographic modelling with whole-genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

(2016) Joana I. Meier et al.   MOLECULAR ECOLOGY

Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis

(2016) Dingqiao Wen et al.   MOLECULAR ECOLOGY

Demographic history of speciation in aSenecioaltitudinal hybrid zone on Mt. Etna

(2016) Dmitry A. Filatov et al.   MOLECULAR ECOLOGY

Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth

(2016) Christopher H. Martin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?

(2016) Andreas F. Kautt et al.   Ecology and Evolution

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids

(2016) Andreas F. Kautt et al.   PLoS Genetics

Species Diversity Is Dynamic and Unbounded at Local and Continental Scales

(2015) Luke J. Harmon et al.   AMERICAN NATURALIST

Adaptive radiation of Darwin's finches revisited using whole genome sequencing

(2015) Markus Sällman Almén et al.   BIOESSAYS

Divergence and gene flow among Darwin's finches: A genome-wide view of adaptive radiation driven by interspecies allele sharing

(2015) Daniela H. Palmer et al.   BIOESSAYS

Novelty and Innovation in the History of Life

(2015) Douglas H. Erwin   CURRENT BIOLOGY

Neurobeachin Is Required Postsynaptically for Electrical and Chemical Synapse Formation

(2015) Adam C. Miller et al.   CURRENT BIOLOGY

Mate Choice by Both Sexes Maintains Reproductive Isolation in a Species Flock of Pupfish (Cyprinodonspp) in the Bahamas

(2015) Rhiannon J. D. West et al.   ETHOLOGY

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

(2015) Prashanti Manda et al.   GENESIS

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

(2015) Richard C. Edmunds et al.   MOLECULAR BIOLOGY AND EVOLUTION

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment

(2015) Antonia G. P. Ford et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets

(2015) Laura C. Norris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers

(2015) Sean Stankowski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

(2015) M. Malinsky et al.   SCIENCE

The genomics of organismal diversification illuminated by adaptive radiations

(2015) Daniel Berner et al.   TRENDS IN GENETICS

Reproductive Isolation of Hybrid Populations Driven by Genetic Incompatibilities

(2015) Molly Schumer et al.   PLoS Genetics

Speciation in Freshwater Fishes

(2014) Ole Seehausen et al.   Annual Review of Ecology Evolution and Systematics

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes

(2014) Christopher H. Martin et al.   MOLECULAR ECOLOGY

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Asymmetries in premating isolating mechanisms in a sympatric species flock of pupfish (Cyprinodon)

(2013) A. Kodric-Brown et al.   BEHAVIORAL ECOLOGY

Unsupervised genome-wide recognition of local relationship patterns

(2013) Neda Zamani et al.   BMC GENOMICS

A Remarkable Species Flock ofCyprinodonPupfishes Endemic to San Salvador Island, Bahamas

(2013) Christopher H. Martin et al.   Bulletin of the Peabody Museum of Natural History

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Conditions when hybridization might predispose populations for adaptive radiation

(2013) O. Seehausen   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

On the Measurement of Ecological Novelty: Scale-Eating Pupfish Are Separated by 168 my from Other Scale-Eating Fishes

(2013) Christopher H. Martin et al.   PLoS One

Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae

(2013) Y. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Fitness Peaks on the Adaptive Landscape Drive Adaptive Radiation in the Wild

(2013) C. H. Martin et al.   SCIENCE

The BEACH Is Hot: A LYST of Emerging Roles for BEACH-Domain Containing Proteins in Human Disease

(2013) Andrew R. Cullinane et al.   TRAFFIC

Diversity, Differentiation, and Linkage Disequilibrium: Prospects for Association Mapping in the Malaria Vector Anopheles arabiensis

(2013) Clare Diana Marsden et al.   G3-Genes Genomes Genetics

A Hybrid Genetic Linkage Map of Two Ecologically and Morphologically Divergent Midas Cichlid Fishes ( Amphilophus spp.) Obtained by Massively Parallel DNA Sequencing (ddRADSeq)

(2013) Hans Recknagel et al.   G3-Genes Genomes Genetics

Indirect Evolution of Hybrid Lethality Due to Linkage with Selected Locus in Mimulus guttatus

(2013) Kevin M. Wright et al.   PLOS BIOLOGY

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

(2013) Peter E Midford et al.   Journal of Biomedical Semantics

Estimating ancestry and heterozygosity of hybrids using molecular markers

(2012) Benjamin M Fitzpatrick   BMC EVOLUTIONARY BIOLOGY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

(2012) P. Mabee et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Rbms3 functions in craniofacial development by posttranscriptionally modulating TGF-β signaling

(2012) Chathurani S. Jayasena et al.   JOURNAL OF CELL BIOLOGY

Mutations in the TGF-β repressor SKI cause Shprintzen-Goldberg syndrome with aortic aneurysm

(2012) Alexander J Doyle et al.   NATURE GENETICS

Haploinsufficiency of the autism candidate gene Neurobeachin induces autism-like behaviors and affects cellular and molecular processes of synaptic plasticity in mice

(2012) Kim Nuytens et al.   NEUROBIOLOGY OF DISEASE

Tempo of trophic evolution and its impact on mammalian diversification

(2012) S. A. Price et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The Autism Candidate Gene Neurobeachin Encodes a Scaffolding Protein Implicated in Membrane Trafficking and Signaling

(2011) K. Volders et al.   CURRENT MOLECULAR MEDICINE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

Reproductive isolation among endemic pupfishes (Cyprinodon) on San Salvador Island, Bahamas: microsatellite evidence

(2010) BRUCE J. TURNER et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus

(2010) Kenneth D. Whitney et al.   NEW PHYTOLOGIST

Complexity and Diversity

(2010) M. Doebeli et al.   SCIENCE

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Explaining Evolutionary Shifts between Bee and Hummingbird Pollination: Convergence, Divergence, and Directionality

(2008) James D. Thomson et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The relative importance of ecology and geographic isolation for speciation in anoles

(2008) R. S Thorpe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES