Time-dependent rates of molecular evolution

The mode and tempo of hepatitis C virus evolution within and among hosts

(2011) Rebecca R Gray et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

(2011) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Mutability of Y-Chromosomal Microsatellites: Rates, Characteristics, Molecular Bases, and Forensic Implications

(2010) Kaye N. Ballantyne et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

A Continuous-State Coalescent and the Impact of Weak Selection on the Structure of Gene Genealogies

(2010) B. D. O'Fallon et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages

(2010) B. Shapiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

(2010) C. Firth et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species

(2010) John Davison et al.   QUATERNARY SCIENCE REVIEWS

Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock

(2009) Pedro Soares et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

(2009) Chih-Horng Kuo et al.   Biology Direct

Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree

(2009) Yali Xue et al.   CURRENT BIOLOGY

Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms

(2009) Mark Vermeulen et al.   Forensic Science International-Genetics

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR® Yfiler® PCR amplification kit

(2009) Miriam Goedbloed et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Time - the emerging dimension of plant virus studies

(2009) A. J. Gibbs et al.   JOURNAL OF GENERAL VIROLOGY

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

(2009) S. Duffy et al.   JOURNAL OF GENERAL VIROLOGY

Temporal Trails of Natural Selection in Human Mitogenomes

(2009) S. Subramanian   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

(2009) G. I. Peterson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

(2009) MARJU KORSTEN et al.   MOLECULAR ECOLOGY

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

(2009) MIGUEL NAVASCUÉS et al.   MOLECULAR ECOLOGY

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Explaining the Imperfection of the Molecular Clock of Hominid Mitochondria

(2009) Eva-Liis Loogväli et al.   PLoS One

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

(2009) J. E. Decker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?

(2009) Regis Debruyne et al.   SYSTEMATIC BIOLOGY

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Evaluating the mitochondrial timescale of human evolution

(2009) Phillip Endicott et al.   TRENDS IN ECOLOGY & EVOLUTION

High mitogenomic evolutionary rates and time dependency

(2009) Sankar Subramanian et al.   TRENDS IN GENETICS

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

(2009) Gordon W Harkins et al.   Virology Journal

A Bayesian Evaluation of Human Mitochondrial Substitution Rates

(2008) Phillip Endicott et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Mutation patterns of mtDNA: Empirical inferences for the coding region

(2008) Cristina Santos et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

(2008) Matthew J. Phillips   GENE

Experimental Estimation of Mutation Rates in a Wheat Population With a Gene Genealogy Approach

(2008) A.-L. Raquin et al.   GENETICS

Molecular clock debate: Time dependency of molecular rate estimates for mtDNA: this is not the time for wishful thinking

(2008) N Howell et al.   HEREDITY

Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates

(2008) B. M. Henn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation

(2008) L. M. Mateiu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories

(2008) A. Rambaut et al.   MOLECULAR BIOLOGY AND EVOLUTION

High Rates of Molecular Evolution in Hantaviruses

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revealing the hidden complexities of mtDNA inheritance

(2008) DANIEL JAMES WHITE et al.   MOLECULAR ECOLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

The perils of plenty: what are we going to do with all these genes?

(2008) A. Rodrigo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Effect of Inappropriate Calibration: Three Case Studies in Molecular Ecology

(2008) Simon Y. W. Ho et al.   PLoS One

A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones

(2008) Lu Feng et al.   PLoS One

Rapid molecular evolution in a living fossil

(2008) Jennifer M. Hay et al.   TRENDS IN GENETICS

Molecular and morphological evolution in tuatara are decoupled

(2008) Sankar Subramanian et al.   TRENDS IN GENETICS

The evolutionary rate of tuatara revisited

(2008) Hilary C. Miller et al.   TRENDS IN GENETICS

Strong Purifying Selection in Transmission of Mammalian Mitochondrial DNA

(2008) James Bruce Stewart et al.   PLOS BIOLOGY

Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster

(2008) Cathy Haag-Liautard et al.   PLOS BIOLOGY

Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic

(2008) Craig D. Millar et al.   PLoS Genetics

Utility of DNA viruses for studying human host history: Case study of JC virus

(2007) Andrew Kitchen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION