Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure

Timing of mutualist arrival has a greater effect on Pinus muricata seedling growth than interspecific competition

(2018) Kabir G. Peay   JOURNAL OF ECOLOGY

Functional outcomes of fungal community shifts driven by tree genotype and spatial-temporal factors in Mediterranean pine forests

(2017) Leticia Pérez-Izquierdo et al.   ENVIRONMENTAL MICROBIOLOGY

Integrating phylogenetic and ecological distances reveals new insights into parasite host specificity

(2017) Nicholas J. Clark et al.   MOLECULAR ECOLOGY

Tree genetics defines fungal partner communities that may confer drought tolerance

(2017) Catherine A. Gehring et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant performance was greater in the soils of more distantly related plants for an herbaceous understory species

(2017) Drake D. Sweet et al.   AoB Plants

The Mutualistic Niche: Mycorrhizal Symbiosis and Community Dynamics

(2016) Kabir G. Peay   Annual Review of Ecology Evolution and Systematics

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment

(2016) Nhu H. Nguyen et al.   MOLECULAR ECOLOGY

Dimensions of biodiversity in the Earth mycobiome

(2016) Kabir G. Peay et al.   NATURE REVIEWS MICROBIOLOGY

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce

(2016) Heiko Nacke et al.   Frontiers in Microbiology

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

(2016) S. Uroz et al.   Scientific Reports

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Relative importance of soil physico-chemical characteristics and plant species identity to the determination of soil microbial community structure

(2015) André M. Massenssini et al.   APPLIED SOIL ECOLOGY

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

(2015) Kabir G. Peay et al.   ECOLOGY LETTERS

Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains

(2015) Yumiko Miyamoto et al.   ISME Journal

Tree genotype mediates covariance among communities from microbes to lichens and arthropods

(2015) Louis J. Lamit et al.   JOURNAL OF ECOLOGY

Fungal Traits That Drive Ecosystem Dynamics on Land

(2015) Kathleen K. Treseder et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Contrasting effects of plant species traits and moisture on the decomposition of multiple litter fractions

(2015) Charlotte E. Riggs et al.   OECOLOGIA

Trait-based partner selection drives mycorrhizal network assembly

(2015) Pierre-Luc Chagnon et al.   OIKOS

Pervasive and strong effects of plants on soil chemistry: a meta-analysis of individual plant ‘Zinke’ effects

(2015) Bonnie G. Waring et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Effects of tree identity dominate over tree diversity on the soil microbial community structure

(2015) Andrea Scheibe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus

(2015) J. H. Burns et al.   AoB Plants

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetic variation within a dominant shrub structures green and brown community assemblages

(2014) Gregory M. Crutsinger et al.   ECOLOGY

Phylogenetic conservatism in plant-soil feedback and its implications for plant abundance

(2014) Brian L. Anacker et al.   ECOLOGY LETTERS

Soil Fungal Communities Respond to Grassland Plant Community Richness and Soil Edaphics

(2014) Nicholas LeBlanc et al.   MICROBIAL ECOLOGY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Pathogens and insect herbivores drive rainforest plant diversity and composition

(2014) Robert Bagchi et al.   NATURE

Host identity is a dominant driver of mycorrhizal fungal community composition during ecosystem development

(2014) Laura B. Martínez-García et al.   NEW PHYTOLOGIST

Towards a holistic understanding of the beneficial interactions across thePopulusmicrobiome

(2014) Stéphane Hacquard et al.   NEW PHYTOLOGIST

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

(2014) T.B.K. Reddy et al.   NUCLEIC ACIDS RESEARCH

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands

(2014) Chao Wang et al.   Nature Communications

Multiple mutualist effects: conflict and synergy in multispecies mutualisms

(2013) Michelle E. Afkhami et al.   ECOLOGY

pH dominates variation in tropical soil archaeal diversity and community structure

(2013) Binu M. Tripathi et al.   FEMS MICROBIOLOGY ECOLOGY

Tree species influence on microbial communities in litter and soil: Current knowledge and research needs

(2013) Cindy E. Prescott et al.   FOREST ECOLOGY AND MANAGEMENT

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

Diffuse symbioses: roles of plant-plant, plant-microbe and microbe-microbe interactions in structuring the soil microbiome

(2013) Matthew G. Bakker et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis

(2013) Leho Tedersoo et al.   NEW PHYTOLOGIST

The Ectomycorrhizal Fungal Community in a Neotropical Forest Dominated by the Endemic Dipterocarp Pakaraimaea dipterocarpacea

(2013) Matthew E. Smith et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

Habitat specialization and the role of trait lability in structuring diverse willow (genusSalix) communities

(2012) Jessica A. Savage et al.   ECOLOGY

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A novel statistical method for classifying habitat generalists and specialists

(2011) Robin L. Chazdon et al.   ECOLOGY

Mycorrhizal fungal identity and diversity relaxes plant–plant competition

(2011) Cameron Wagg et al.   ECOLOGY

Responses of soil microbial communities to water stress: results from a meta-analysis

(2011) Stefano Manzoni et al.   ECOLOGY

Experimental evidence for a phylogenetic Janzen-Connell effect in a subtropical forest

(2011) Xubing Liu et al.   ECOLOGY LETTERS

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis

(2011) E. T. Kiers et al.   SCIENCE

Contrasting drought survival strategies of sympatric willows (genus: Salix): consequences for coexistence and habitat specialization

(2011) J. A. Savage et al.   TREE PHYSIOLOGY

Nitrogen availability is a primary determinant of conifer mycorrhizas across complex environmental gradients

(2010) Filipa Cox et al.   ECOLOGY LETTERS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European forest

(2010) Christa Lang et al.   MYCORRHIZA

Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest

(2010) Scott A. Mangan et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Resource limitation is a driver of local adaptation in mycorrhizal symbioses

(2010) N. C. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography of soil archaea and bacteria along a steep precipitation gradient

(2009) Roey Angel et al.   ISME Journal

Plant and fungal identity determines pathogen protection of plant roots by arbuscular mycorrhizas

(2009) Benjamin A. Sikes et al.   JOURNAL OF ECOLOGY

Changes in ectomycorrhizal community structure on two containerized oak hosts across an experimental hydrologic gradient

(2009) J. Cavender-Bares et al.   MYCORRHIZA

Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest

(2009) M. Öpik et al.   NEW PHYTOLOGIST

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal