Diversity, structure and convergent evolution of the global sponge microbiome

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Role of root microbiota in plant productivity

(2015) A. Tkacz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Direct evidence that density-dependent regulation underpins the temporal stability of abundant species in a diverse animal community

(2014) P. A. Henderson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges

(2014) Cole G. Easson et al.   Frontiers in Microbiology

Metabolic diversity and niche structure in sponges from the Miskito Cays, Honduras

(2014) Christopher J. Freeman et al.   PeerJ

Worms need microbes too: microbiota, health and aging inCaenorhabditis elegans

(2013) Filipe Cabreiro et al.   EMBO Molecular Medicine

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea

(2013) Lucas Moitinho-Silva et al.   MOLECULAR ECOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs

(2013) Jasper M. de Goeij et al.   SCIENCE

Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance

(2012) Patrick M. Erwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Sponge-specific’ bacteria are widespread (but rare) in diverse marine environments

(2012) Michael W Taylor et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Genomic insights into the marine sponge microbiome

(2012) Ute Hentschel et al.   NATURE REVIEWS MICROBIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Global Diversity of Sponges (Porifera)

(2012) Rob W. M. Van Soest et al.   PLoS One

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

(2011) Rachel L. Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Integrating food web diversity, structure and stability

(2011) Neil Rooney et al.   TRENDS IN ECOLOGY & EVOLUTION

Metabolite Cross-Feeding Enhances Virulence in a Model Polymicrobial Infection

(2011) Matthew M. Ramsey et al.   PLoS Pathogens

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The architecture of mutualistic networks minimizes competition and increases biodiversity

(2009) Ugo Bastolla et al.   NATURE

What drives community dynamics?

(2009) C. M. Mutshinda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES