The high‐quality genome of diploid strawberry ( Fragaria nilgerrensis ) provides new insights into anthocyanin accumulation
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Title
The high‐quality genome of diploid strawberry (
Fragaria nilgerrensis
) provides new insights into anthocyanin accumulation
Authors
Keywords
-
Journal
PLANT BIOTECHNOLOGY JOURNAL
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-01-31
DOI
10.1111/pbi.13351
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Note: Only part of the references are listed.- Transposable elements drive rapid phenotypic variation in Capsella rubella
- (2019) Xiao-Min Niu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Origin and evolution of the octoploid strawberry genome
- (2019) Patrick P. Edger et al. NATURE GENETICS
- A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour
- (2019) Liyi Zhang et al. Nature Communications
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- (2019) Linkai Huang et al. PLANT BIOTECHNOLOGY JOURNAL
- The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley
- (2019) Miao Liu et al. PLANT BIOTECHNOLOGY JOURNAL
- De novo assembly of a wild pear ( Pyrus betuleafolia ) genome
- (2019) Xingguang Dong et al. PLANT BIOTECHNOLOGY JOURNAL
- Sucrose Promotes Strawberry Fruit Ripening and Affects Ripening-Related Processes
- (2019) Ya Luo et al. International Journal of Genomics
- The control of red colour by a family of MYB transcription factors in octoploid strawberry ( Fragaria × ananassa ) fruits
- (2019) Hua Wang et al. PLANT BIOTECHNOLOGY JOURNAL
- Creating interspecific hybrids with improved cold resistance in Fragaria
- (2018) Gangjun Luo et al. SCIENTIA HORTICULTURAE
- High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
- (2018) Todd P. Michael et al. Nature Communications
- Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana
- (2018) Zi-Wen Li et al. Genome Biology and Evolution
- Investigation and taxonomy of wild Fragaria resources in Tibet, China
- (2017) Ruixue Guo et al. GENETIC RESOURCES AND CROP EVOLUTION
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Single nucleotide mutation in FvMYB10 may lead to the yellow fruit in Fragaria vesca
- (2017) Junxiang Zhang et al. MOLECULAR BREEDING
- The draft genome of tropical fruit durian (Durio zibethinus)
- (2017) Bin Tean Teh et al. NATURE GENETICS
- High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
- (2017) Nicolas Daccord et al. NATURE GENETICS
- Insight into octoploid strawberry (Fragaria) subgenome composition revealed by GISH analysis of pentaploid hybrids
- (2016) Bo Liu et al. GENOME
- Plastid ribosomal protein S5 is involved in photosynthesis, plant development, and cold stress tolerance in Arabidopsis
- (2016) Junxiang Zhang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Using intron position conservation for homology-based gene prediction
- (2016) Jens Keilwagen et al. NUCLEIC ACIDS RESEARCH
- Extensive sequence divergence between the reference genomes of two eliteindicarice varieties Zhenshan 97 and Minghui 63
- (2016) Jianwei Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Transcriptomics of Strawberries (Fragaria spp.) Provides Insights into Evolutionary Patterns
- (2016) Qin Qiao et al. Frontiers in Plant Science
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Re-annotation of the woodland strawberry (Fragaria vesca) genome
- (2015) Omar Darwish et al. BMC GENOMICS
- Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)
- (2015) Yuantao Xu et al. BMC GENOMICS
- Progress, challenges and the future of crop genomes
- (2015) Todd P Michael et al. CURRENT OPINION IN PLANT BIOLOGY
- Two MYB transcription factors regulate flavonoid biosynthesis in pear fruit (Pyrus bretschneideriRehd.)
- (2015) Rui Zhai et al. JOURNAL OF EXPERIMENTAL BOTANY
- Transcriptome analysis of an apple (Malus×domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulation
- (2015) Islam El-Sharkawy et al. JOURNAL OF EXPERIMENTAL BOTANY
- Identification of protein coding regions in RNA transcripts
- (2015) Shiyuyun Tang et al. NUCLEIC ACIDS RESEARCH
- KEGG as a reference resource for gene and protein annotation
- (2015) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Fragaria : A genus with deep historical roots and ripe for evolutionary and ecological insights
- (2014) Aaron Liston et al. AMERICAN JOURNAL OF BOTANY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Light and abscisic acid independently regulated FaMYB10 in Fragaria × ananassa fruit
- (2014) Yasuko Kadomura-Ishikawa et al. PLANTA
- PASTEC: An Automatic Transposable Element Classification Tool
- (2014) Claire Hoede et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Engineering the anthocyanin regulatory complex of strawberry (Fragaria vesca)
- (2014) Kui Lin-Wang et al. Frontiers in Plant Science
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species
- (2013) H. Hirakawa et al. DNA RESEARCH
- MYB10plays a major role in the regulation of flavonoid/phenylpropanoid metabolism during ripening ofFragaria×ananassafruits
- (2013) Laura Medina-Puche et al. JOURNAL OF EXPERIMENTAL BOTANY
- A genome-enabled, high-throughput, and multiplexed fingerprinting platform for strawberry (Fragaria L.)
- (2013) Alan Chambers et al. MOLECULAR BREEDING
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- Sucrose functions as a signal involved in the regulation of strawberry fruit development and ripening
- (2013) Haifeng Jia et al. NEW PHYTOLOGIST
- The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear
- (2013) Z. Wang et al. PLANT PHYSIOLOGY
- Calcium-Dependent Protein Kinases: Hubs in Plant Stress Signaling and Development
- (2013) P. Schulz et al. PLANT PHYSIOLOGY
- Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
- (2012) Wambui Njuguna et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
- (2012) Adam C. English et al. PLoS One
- Karyotype analysis using FISH (fluorescence in situ hybridization) in Fragaria
- (2012) Il Rae Rho et al. SCIENTIA HORTICULTURAE
- Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
- (2011) Maud I. Tenaillon et al. Genome Biology and Evolution
- Karyotype Analysis in Wild Diploid, Tetraploid and Hexaploid Strawberries, Fragaria (Rosaceae)
- (2010) Preeda Nathewet et al. CYTOLOGIA
- The genome of woodland strawberry (Fragaria vesca)
- (2010) Vladimir Shulaev et al. NATURE GENETICS
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): New insights from phylogenetic analyses of low-copy nuclear genes
- (2009) M. Rousseau-Gueutin et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Multiple Repeats of a Promoter Segment Causes Transcription Factor Autoregulation in Red Apples
- (2009) R. V. Espley et al. PLANT CELL
- SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap
- (2008) A. D. Johnson et al. BIOINFORMATICS
- genBlastA: Enabling BLAST to identify homologous gene sequences
- (2008) R. She et al. GENOME RESEARCH
- Genome size evolution: Within-species variation in genome size
- (2008) C Biémont HEREDITY
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
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