Transcriptome analysis of an apple (Malus×domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulation

Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant

(2014) Chinedu Nwafor et al.   BMC GENOMICS

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

(2014) Lisette J A Kogelman et al.   BMC Medical Genomics

Review on statistical methods for gene network reconstruction using expression data

(2014) Y.X. Rachel Wang et al.   JOURNAL OF THEORETICAL BIOLOGY

Towards an improved apple reference transcriptome using RNA-seq

(2014) Yang Bai et al.   MOLECULAR GENETICS AND GENOMICS

Transcriptional landscape of the prenatal human brain

(2014) Jeremy A. Miller et al.   NATURE

The red sport of ‘Zaosu’ pear and its red-striped pigmentation pattern are associated with demethylation of the PyMYB10 promoter

(2014) Minjie Qian et al.   PHYTOCHEMISTRY

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks

(2014) C. A. Hollender et al.   PLANT PHYSIOLOGY

Anthocyanins Double the Shelf Life of Tomatoes by Delaying Overripening and Reducing Susceptibility to Gray Mold

(2013) Yang Zhang et al.   CURRENT BIOLOGY

The columnar mutation (“Co gene”) of apple (Malus × domestica) is associated with an integration of a Gypsy-like retrotransposon

(2013) Dominik Otto et al.   MOLECULAR BREEDING

The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear

(2013) Z. Wang et al.   PLANT PHYSIOLOGY

A core–shell column approach to a comprehensive high-performance liquid chromatography phenolic analysis of Vitis vinifera L. and interspecific hybrid grape juices, wines, and other matrices following either solid phase extraction or direct injection

(2012) David C. Manns et al.   JOURNAL OF CHROMATOGRAPHY A

The apple WD40 protein MdTTG1 interacts with bHLH but not MYB proteins to regulate anthocyanin accumulation

(2012) Xiu-Hong An et al.   JOURNAL OF PLANT PHYSIOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A single amino acid change within the R2 domain of the VvMYB5b transcription factor modulates affinity for protein partners and target promoters selectivity

(2011) Imène Hichri et al.   BMC PLANT BIOLOGY

Apple skin patterning is associated with differential expression of MYB10

(2011) Adriana Telias et al.   BMC PLANT BIOLOGY

Comparison of MdMYB1 sequences and expression of anthocyanin biosynthetic and regulatory genes between Malus domestica Borkh. cultivar ‘Ralls’ and its blushed sport

(2011) Yuting Xu et al.   EUPHYTICA

EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, the progenitor species of domestic apple

(2011) Aide Wang et al.   MOLECULAR BREEDING

Arabidopsis TT19 Functions as a Carrier to Transport Anthocyanin from the Cytosol to Tonoplasts

(2011) Yi Sun et al.   Molecular Plant

The Jasmonate-ZIM-Domain Proteins Interact with the WD-Repeat/bHLH/MYB Complexes to Regulate Jasmonate-Mediated Anthocyanin Accumulation and Trichome Initiation inArabidopsis thaliana

(2011) Tiancong Qi et al.   PLANT CELL

High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex

(2011) KUI LIN-WANG et al.   PLANT CELL AND ENVIRONMENT

Recent advances on the regulation of anthocyanin synthesis in reproductive organs

(2011) Katia Petroni et al.   PLANT SCIENCE

The Purple Cauliflower Arises from Activation of a MYB Transcription Factor

(2010) L.-W. Chiu et al.   PLANT PHYSIOLOGY

Multiple Repeats of a Promoter Segment Causes Transcription Factor Autoregulation in Red Apples

(2009) R. V. Espley et al.   PLANT CELL

Color recovery in berries of grape (Vitis vinifera L.) ‘Benitaka’, a bud sport of ‘Italia’, is caused by a novel allele at the VvmybA1 locus

(2009) Akifumi Azuma et al.   PLANT SCIENCE

Kismeth: Analyzer of plant methylation states through bisulfite sequencing

(2008) Eyal Gruntman et al.   BMC BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Progressive Loss of DNA Methylation Releases Epigenetic Gene Silencing From a Tandemly Repeated Maize Myb Gene

(2008) R. S. Sekhon et al.   GENETICS

Effect of delayed storage and continuous ethylene exposure on flesh reddening of ‘Royal Diamond’ plums

(2008) George A Manganaris et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport

(2008) Maria-Cruz Cutanda-Perez et al.   PLANT MOLECULAR BIOLOGY