Different carboxyl‐rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea

SAR11 bacteria have a high affinity and multifunctional glycine betaine transporter

(2019) Stephen E. Noell et al.   ENVIRONMENTAL MICROBIOLOGY

Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals

(2018) Alexey Vorobev et al.   ENVIRONMENTAL MICROBIOLOGY

Online HPLC-ESI-HRMS Method for the Analysis and Comparison of Different Dissolved Organic Matter Samples

(2018) Claudia Patriarca et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Unifying Concepts Linking Dissolved Organic Matter Composition to Persistence in Aquatic Ecosystems

(2018) Anne M. Kellerman et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Molecular Structure Characterization of Riverine and Coastal Dissolved Organic Matter with Ion Mobility Quadrupole Time-of-Flight LCMS (IM Q-TOF LCMS)

(2018) Kaijun Lu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Organic carbon source and salinity shape sediment bacterial composition in two China marginal seas and their major tributaries

(2018) Kai Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments

(2018) Johannes Holert et al.   mBio

The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico

(2018) Leila J. Hamdan et al.   Scientific Reports

High mutation rates limit evolutionary adaptation in Escherichia coli

(2018) Kathleen Sprouffske et al.   PLoS Genetics

Extracellular Enzyme Activity Profile in a Chemically Enhanced Water Accommodated Fraction of Surrogate Oil: Toward Understanding Microbial Activities After the Deepwater Horizon Oil Spill

(2018) Manoj Kamalanathan et al.   Frontiers in Microbiology

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

(2018) Roland C. Wilhelm et al.   ISME Journal

Differential incorporation of one-carbon substrates among microbial populations identified by stable isotope probing from the estuary to South China Sea

(2018) Wenchao Deng et al.   Scientific Reports

Cascading influence of inorganic nitrogen sources on DOM production, composition, lability and microbial community structure in the open ocean

(2017) S. J. Goldberg et al.   ENVIRONMENTAL MICROBIOLOGY

Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation

(2017) Wei Xie et al.   ENVIRONMENTAL MICROBIOLOGY

Unraveling signatures of biogeochemical processes and the depositional setting in the molecular composition of pore water DOM across different marine environments

(2017) Frauke Schmidt et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling

(2017) Maliheh Mehrshad et al.   ISME Journal

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

(2017) C S Lazar et al.   ISME Journal

Molecular composition of dissolved organic matter in the Mediterranean Sea

(2017) Alba María Martínez-Pérez et al.   LIMNOLOGY AND OCEANOGRAPHY

Extraction efficiency and quantification of dissolved metabolites in targeted marine metabolomics

(2017) Winifred M. Johnson et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Molecular properties of deep-sea dissolved organic matter are predictable by the central limit theorem: Evidence from tandem FT-ICR-MS

(2017) Maren Zark et al.   MARINE CHEMISTRY

Simulation ofDeepwater Horizonoil plume reveals substrate specialization within a complex community of hydrocarbon degraders

(2017) Ping Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico “Dead Zone”

(2017) J. Cameron Thrash et al.   mBio

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

(2017) Zachary Landry et al.   mBio

Variation of Oxygenation Conditions on a Hydrocarbonoclastic Microbial Community Reveals Alcanivorax and Cycloclasticus Ecotypes

(2017) Fanny Terrisse et al.   Frontiers in Microbiology

Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments

(2017) Katy Hoffmann et al.   Frontiers in Microbiology

Tapping the archives: the sterol composition of marine sponge species, as determined non-invasively from museum-preserved specimens, reveals biogeographical features

(2016) S. K. Lengger et al.   Geobiology

Spongiibacter taiwanensis sp. nov., a marine bacterium isolated from aged seawater

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean

(2016) William D Orsi et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Sponge Hologenome

(2016) Nicole S. Webster et al.   mBio

The Size-Reactivity Continuum of Major Bioelements in the Ocean

(2015) Ronald Benner et al.   Annual Review of Marine Science

Dissolved organic matter in newly formed sea ice and surface seawater

(2015) Krista Longnecker   GEOCHIMICA ET COSMOCHIMICA ACTA

Dissolved organic matter composition and photochemical transformations in the northern North Pacific Ocean

(2015) Patricia. M. Medeiros et al.   GEOPHYSICAL RESEARCH LETTERS

Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom

(2015) Emma K. Wear et al.   LIMNOLOGY AND OCEANOGRAPHY

Environmental metabolomics: Analytical strategies

(2015) Melissa C. Kido Soule et al.   MARINE CHEMISTRY

Metabolic characterization of a model heterotrophic bacterium capable of significant chemical alteration of marine dissolved organic matter

(2015) Byron Pedler Sherwood et al.   MARINE CHEMISTRY

From mass to structure: an aromaticity index for high-resolution mass data of natural organic matter

(2015) B. P. Koch et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Identification of polyamine-responsive bacterioplankton taxa in South Atlantic Bight

(2015) Xinxin Lu et al.   Environmental Microbiology Reports

Inefficient microbial production of refractory dissolved organic matter in the ocean

(2015) Helena Osterholz et al.   Nature Communications

A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data

(2015) Stefan Spring et al.   Frontiers in Microbiology

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica

(2015) Tom O. Delmont et al.   Frontiers in Microbiology

Characterization and analysis of the molecular weight of lignin for biorefining studies

(2014) Allison Tolbert et al.   Biofuels Bioproducts & Biorefining-Biofpr

Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil's Hole, Bermuda

(2014) Rachel J. Parsons et al.   ENVIRONMENTAL MICROBIOLOGY

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability

(2013) Stefan Spring et al.   BMC MICROBIOLOGY

Functional and compositional succession of bacterioplankton in response to a gradient in bioavailable dissolved organic carbon

(2013) Julie Dinasquet et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic)

(2013) Itziar Lekunberri et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular transformation and degradation of refractory dissolved organic matter in the Atlantic and Southern Ocean

(2013) Oliver J. Lechtenfeld et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Evidence for key enzymatic controls on metabolism of Arctic river organic matter

(2013) Paul J. Mann et al.   GLOBAL CHANGE BIOLOGY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Differences in peptide decomposition rates and pathways between hypoxic and oxic coastal environments

(2013) Zhanfei Liu et al.   MARINE CHEMISTRY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Differential effects of hydrographic and biogeochemical properties on the SAR11 clade and Roseobacter RCA cluster in the North Sea

(2012) M Sperling et al.   AQUATIC MICROBIAL ECOLOGY

Cauliform bacteria lacking phospholipids from an abyssal hydrothermal vent: proposal of Glycocaulis abyssi gen. nov., sp. nov., belonging to the family Hyphomonadaceae

(2012) W.-R. Abraham et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

Two New Cholic Acid Derivatives from the Marine Ascidian-Associated Bacterium Hasllibacter halocynthiae

(2012) Sung Hun Kim et al.   MOLECULES

Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities

(2012) Juan M. Gonzalez et al.   PLoS One

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

(2012) Frank J. Stewart et al.   PLoS One

Comparative Genomics Reveals Adaptation by Alteromonas sp. SN2 to Marine Tidal-Flat Conditions: Cold Tolerance and Aromatic Hydrocarbon Metabolism

(2012) Renukaradhya K. Math et al.   PLoS One

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota

(2012) V. Iverson et al.   SCIENCE

Recalcitrant Dissolved Organic Carbon Fractions

(2011) Dennis A. Hansell   Annual Review of Marine Science

Net Production and Consumption of Fluorescent Colored Dissolved Organic Matter by Natural Bacterial Assemblages Growing on Marine Phytoplankton Exudates

(2011) Cristina Romera-Castillo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Barcoding bias in high-throughput multiplex sequencing of miRNA

(2011) S. Alon et al.   GENOME RESEARCH

Net removal of major marine dissolved organic carbon fractions in the subsurface ocean

(2011) Dennis A. Hansell et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

(2011) J Michael Beman et al.   ISME Journal

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea

(2011) Rachel J Parsons et al.   ISME Journal

Identification and characterization of two bile acid coenzyme A transferases fromClostridium scindens, a bile acid 7α-dehydroxylating intestinal bacterium

(2011) Jason M. Ridlon et al.   JOURNAL OF LIPID RESEARCH

A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater

(2011) Thorsten Dittmar et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Using principal components analysis (PCA) with cluster analysis to study the organic geochemistry of sinking particles in the ocean

(2011) Jianhong Xue et al.   ORGANIC GEOCHEMISTRY

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin

(2010) Craig A. Carlson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Genomic and functional adaptation in surface ocean planktonic prokaryotes

(2010) Shibu Yooseph et al.   NATURE

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea

(2009) Y Zhang et al.   AQUATIC MICROBIAL ECOLOGY

Bile acid derivatives from a sponge-associated bacterium Psychrobacter sp.

(2009) Huayue Li et al.   ARCHIVES OF PHARMACAL RESEARCH

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre

(2009) Alexander Eiler et al.   ENVIRONMENTAL MICROBIOLOGY

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

(2009) Martha Schattenhofer et al.   ENVIRONMENTAL MICROBIOLOGY

Production of bioavailable and refractory dissolved organic matter by coastal heterotrophic microbial populations

(2009) Christian Lønborg et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Spongiibacter tropicus sp. nov., isolated from a Synechococcus culture

(2009) C. Y. Hwang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal dynamics of dissolved combined neutral sugars and the quality of dissolved organic matter in the Northwestern Sargasso Sea

(2008) Stuart J. Goldberg et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic

(2008) Marta M. Varela et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

Molecular characterization of dissolved organic matter (DOM) along a river to ocean transect of the lower Chesapeake Bay by ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

(2008) Rachel L. Sleighter et al.   MARINE CHEMISTRY

Biochemical composition and size distribution of organic matter at the Pacific and Atlantic time-series stations

(2008) Karl Kaiser et al.   MARINE CHEMISTRY

Amino acid and amino sugar yields and compositions as indicators of dissolved organic matter diagenesis

(2008) Jenny Davis et al.   ORGANIC GEOCHEMISTRY