SAR11 bacteria have a high affinity and multifunctional glycine betaine transporter

A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton

(2019) Stephen J. Giovannoni et al.   mBio

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Effects of growth rate, cell size, motion, and elemental stoichiometry on nutrient transport kinetics

(2018) Kevin J. Flynn et al.   PLoS Computational Biology

Heterotrophic substrate specificity in the aquatic environment: The role of microscale patchiness investigated using modeling

(2018) Ferdi L. Hellweger   ENVIRONMENTAL MICROBIOLOGY

Constraint-based simulation of multiple interactive elemental cycles in biogeochemical systems

(2018) Ann Marie Reinhold et al.   Ecological Informatics

Biological cycling of volatile organic carbon by phytoplankton and bacterioplankton

(2017) Kimberly H. Halsey et al.   LIMNOLOGY AND OCEANOGRAPHY

Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean

(2017) Elisabeth L. Clifford et al.   LIMNOLOGY AND OCEANOGRAPHY

Primordial-like enzymes from bacteria with reduced genomes

(2017) Matteo P. Ferla et al.   MOLECULAR MICROBIOLOGY

Dimethylsulfoniopropionate biosynthesis in marine bacteria and identification of the key gene in this process

(2017) Andrew R. J. Curson et al.   Nature Microbiology

Surface properties of SAR11 bacteria facilitate grazing avoidance

(2017) Ayelet Dadon-Pilosof et al.   Nature Microbiology

Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

(2017) Martino Bertoni et al.   Scientific Reports

Three-Dimensional Structure of the Ultraoligotrophic Marine Bacterium “Candidatus Pelagibacter ubique”

(2016) Xiaowei Zhao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Direct single-cell biomass estimates for marine bacteria via Archimedes’ principle

(2016) Nathan Cermak et al.   ISME Journal

The SWISS-MODEL Repository—new features and functionality

(2016) Stefan Bienert et al.   NUCLEIC ACIDS RESEARCH

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol

(2016) Jing Sun et al.   Nature Microbiology

Binding proteins enhance specific uptake rate by increasing the substrate-transporter encounter rate

(2015) Evert Bosdriesz et al.   FEBS Journal

Carnitine in bacterial physiology and metabolism

(2015) Jamie A. Meadows et al.   MICROBIOLOGY-SGM

The EMBL-EBI bioinformatics web and programmatic tools framework

(2015) Weizhong Li et al.   NUCLEIC ACIDS RESEARCH

Ergothioneine Biosynthetic Methyltransferase EgtD Reveals the Structural Basis of Aromatic Amino Acid Betaine Biosynthesis

(2014) Allegra Vit et al.   CHEMBIOCHEM

A generalized optimization model of microbially driven aquatic biogeochemistry based on thermodynamic, kinetic, and stoichiometric ecological theory

(2014) R.A. Payn et al.   ECOLOGICAL MODELLING

Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea

(2014) Paul Carini et al.   ISME Journal

Temporal dynamics and depth variations of dissolved free amino acids and polyamines in coastal seawater determined by high-performance liquid chromatography

(2014) Xinxin Lu et al.   MARINE CHEMISTRY

Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria

(2014) I. Lidbury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Genome Reduction Promotes Increase in Protein Functional Complexity in Bacteria

(2012) Y. D. Kelkar et al.   GENETICS

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

Identification and Characterization of d-Hydroxyproline Dehydrogenase and Δ1-Pyrroline-4-hydroxy-2-carboxylate Deaminase Involved in Novel l-Hydroxyproline Metabolism of Bacteria

(2012) Seiya Watanabe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

Distribution and Functions of TonB-Dependent Transporters in Marine Bacteria and Environments: Implications for Dissolved Organic Matter Utilization

(2012) Kai Tang et al.   PLoS One

Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181

(2011) Kimberly H. Halsey et al.   ENVIRONMENTAL MICROBIOLOGY

Independent evolutionary origins of functional polyamine biosynthetic enzyme fusions catalysing de novo diamine to triamine formation

(2011) Robert Green et al.   MOLECULAR MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria

(2011) Jing Sun et al.   PLoS One

Toward the estimation of the absolute quality of individual protein structure models

(2010) Pascal Benkert et al.   BIOINFORMATICS

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581T

(2010) Karin Schwibbert et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Proteomic Analysis of Stationary Phase in the Marine Bacterium "Candidatus Pelagibacter ubique"

(2008) S. M. Sowell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Intracellular Organic Osmolytes: Function and Regulation

(2008) Maurice B. Burg et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure, Function, and Evolution of Bacterial ATP-Binding Cassette Systems

(2008) A. L. Davidson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440

(2008) J. I. Jimenez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA