Ocean acidification promotes broad transcriptomic responses in marine metazoans: a literature survey

Marine heatwaves threaten global biodiversity and the provision of ecosystem services

(2019) Dan A. Smale et al.   Nature Climate Change

Transgenerational effects of short-term exposure to acidification and hypoxia on early developmental traits of the mussel Mytilus edulis

(2019) Hui Kong et al.   MARINE ENVIRONMENTAL RESEARCH

Transgenerational effects in an ecological context: Conditioning of adult sea urchins to upwelling conditions alters maternal provisioning and progeny phenotype

(2019) Juliet M. Wong et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Transcriptional profiles of early stage red sea urchins (Mesocentrotus franciscanus) reveal differential regulation of gene expression across development

(2019) Juliet M. Wong et al.   Marine Genomics

Living in future ocean acidification, physiological adaptive responses of the immune system of sea urchins resident at a CO2 vent system

(2019) Oriana Migliaccio et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Tipping points of gastric pH regulation and energetics in the sea urchin larva exposed to CO2 -induced seawater acidification

(2019) Hae-Gyeong Lee et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

(2018) Pierre De Wit et al.   BMC GENOMICS

Living in a high CO2 world: a global meta-analysis shows multiple trait-mediated fish responses to ocean acidification

(2018) Carlo Cattano et al.   ECOLOGICAL MONOGRAPHS

Effects of carbamazepine and cetirizine under an ocean acidification scenario on the biochemical and transcriptome responses of the clam Ruditapes philippinarum

(2018) Ângela Almeida et al.   ENVIRONMENTAL POLLUTION

The economic impacts of ocean acidification on shellfish fisheries and aquaculture in the United Kingdom

(2018) Stephen C. Mangi et al.   ENVIRONMENTAL SCIENCE & POLICY

Target gene expression studies on Platynereis dumerilii and Platynereis cfr massiliensis at the shallow CO 2 vents off Ischia, Italy

(2018) Janine Wäge et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Transcriptomics reveal transgenerational effects in purple sea urchin embryos: Adult acclimation to upwelling conditions alters the response of their progeny to differential p CO2 levels

(2018) Juliet M. Wong et al.   MOLECULAR ECOLOGY

Ocean acidification affects coral growth by reducing skeletal density

(2018) Nathaniel R. Mollica et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational acclimation to seawater acidification in the Manila clam Ruditapes philippinarum : Preferential uptake of metabolic carbon

(2018) Liqiang Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Fantastic Beasts and How To Sequence Them: Ecological Genomics for Obscure Model Organisms

(2018) Mikhail V. Matz   TRENDS IN GENETICS

Longer and more frequent marine heatwaves over the past century

(2018) Eric C. J. Oliver et al.   Nature Communications

Near-future CO2 levels impair the olfactory system of a marine fish

(2018) Cosima S. Porteus et al.   Nature Climate Change

The impact of ocean acidification and cadmium on the immune responses of Pacific oyster, Crassostrea gigas

(2018) Ruiwen Cao et al.   FISH & SHELLFISH IMMUNOLOGY

In situ immune response and mechanisms of cell damage in central nervous system of fatal cases microcephaly by Zika virus

(2018) Raimunda S. S. Azevedo et al.   Scientific Reports

Functional biodiversity loss along natural CO2 gradients

(2018) Nuria Teixidó et al.   Nature Communications

Influencing Mechanism of Ocean Acidification on Byssus Performance in the Pearl Oyster Pinctada fucata

(2017) Shiguo Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Functional genomic analysis of corals from natural CO2 -seeps reveals core molecular responses involved in acclimatization to ocean acidification

(2017) Carly D. Kenkel et al.   GLOBAL CHANGE BIOLOGY

Exposure to CO 2 influences metabolism, calcification and gene expression of the thecosome pteropod Limacina retroversa

(2017) Amy E. Maas et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Acid–base physiology, neurobiology and behaviour in relation to CO2-induced ocean acidification

(2017) Martin Tresguerres et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Molecular and geochemical perspectives on the influence of CO2 on calcification in coral cell cultures

(2017) Jeana L. Drake et al.   LIMNOLOGY AND OCEANOGRAPHY

The development of contemporary European sea bass larvae (Dicentrarchus labrax) is not affected by projected ocean acidification scenarios

(2017) Amélie Crespel et al.   MARINE BIOLOGY

Ocean acidification decreases mussel byssal attachment strength and induces molecular byssal responses

(2017) X Zhao et al.   MARINE ECOLOGY PROGRESS SERIES

Ocean acidification alters the burrowing behaviour, Ca2+/Mg2+-ATPase activity, metabolism, and gene expression of a bivalve species, Sinonovacula constricta

(2017) C Peng et al.   MARINE ECOLOGY PROGRESS SERIES

Effect of ocean acidification on growth, calcification, and gene expression in the pearl oyster, Pinctada fucata

(2017) Wenguang Liu et al.   MARINE ENVIRONMENTAL RESEARCH

Assembly of a reference transcriptome for the gymnosome pteropod Clione limacina and profiling responses to short-term CO 2 exposure

(2017) Ali A. Thabet et al.   Marine Genomics

Transcriptomic profiling of adaptive responses to ocean acidification

(2017) Priscila Goncalves et al.   MOLECULAR ECOLOGY

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic

(2017) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to CO2 -acidified sea water

(2017) Allison Bailey et al.   Ecology and Evolution

Ocean acidification decreases mussel byssal attachment strength and induces molecular byssal responses

(2017) X Zhao et al.   MARINE ECOLOGY PROGRESS SERIES

Ocean acidification alters the burrowing behaviour, Ca2+/Mg2+-ATPase activity, metabolism, and gene expression of a bivalve species, Sinonovacula constricta

(2017) C Peng et al.   MARINE ECOLOGY PROGRESS SERIES

Measuring coral calcification under ocean acidification: methodological considerations for the 45Ca-uptake and total alkalinity anomaly technique

(2017) Stephanie Cohen et al.   PeerJ

OUP accepted manuscript

(2017)   Conservation Physiology

An interplay between plasticity and parental phenotype determines impacts of ocean acidification on a reef fish

(2017) Celia Schunter et al.   Nature Ecology & Evolution

Mediterranean versus Red sea corals facing climate change, a transcriptome analysis

(2017) Keren Maor-Landaw et al.   Scientific Reports

Carbon dioxide induced plasticity of branchial acid-base pathways in an estuarine teleost

(2017) Elizabeth B. Allmon et al.   Scientific Reports

Ocean acidification as a driver of community simplification via the collapse of higher-order and rise of lower-order consumers

(2017) S. Vizzini et al.   Scientific Reports

Adjustments of molecular key components of branchial ion and pH regulation in Atlantic cod (Gadus morhua) in response to ocean acidification and warming

(2016) Katharina Michael et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Exposure to low pH induces molecular level changes in the marine worm, Platynereis dumerilii

(2016) Janine Wäge et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Interactive Effects of Seawater Acidification and Elevated Temperature on the Transcriptome and Biomineralization in the Pearl Oyster Pinctada fucata

(2016) Shiguo Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Echinometrasea urchins acclimatized to elevatedpCO2at volcanic vents outperform those under present-daypCO2conditions

(2016) Sven Uthicke et al.   GLOBAL CHANGE BIOLOGY

Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropodHeliconoides inflatus

(2016) Aurelie Moya et al.   GLOBAL CHANGE BIOLOGY

Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors

(2016) Ramadoss Dineshram et al.   GLOBAL CHANGE BIOLOGY

Early life stages of the Arctic copepodCalanus glacialisare unaffected by increased seawaterpCO2

(2016) Allison Bailey et al.   ICES JOURNAL OF MARINE SCIENCE

Non-additive effects of ocean acidification in combination with warming on the larval proteome of the Pacific oyster, Crassostrea gigas

(2016) Ewan Harney et al.   Journal of Proteomics

Coral Carbonic Anhydrases: Regulation by Ocean Acidification

(2016) Didier Zoccola et al.   Marine Drugs

RNA-seq reveals a diminished acclimation response to the combined effects of ocean acidification and elevated seawater temperature in Pagothenia borchgrevinki

(2016) Troy J. Huth et al.   Marine Genomics

Rapid transcriptional acclimation following transgenerational exposure of oysters to ocean acidification

(2016) Priscila Goncalves et al.   MOLECULAR ECOLOGY

Temporal and spatial expression patterns of biomineralization proteins during early development in the stony coralPocillopora damicornis

(2016) Tali Mass et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular signatures of transgenerational response to ocean acidification in a species of reef fish

(2016) Celia Schunter et al.   Nature Climate Change

Effects of Seawater Acidification on Gene Expression: Resolving Broader-Scale Trends in Sea Urchins

(2016) Tyler G. Evans et al.   BIOLOGICAL BULLETIN

Transcriptome and biomineralization responses of the pearl oyster Pinctada fucata to elevated CO2 and temperature

(2016) Shiguo Li et al.   Scientific Reports

Altered brain ion gradients following compensation for elevated CO2 are linked to behavioural alterations in a coral reef fish

(2016) R. M. Heuer et al.   Scientific Reports

Functional genomics to assess biological responses to marine pollution at physiological and evolutionary timescales: toward a vision of predictive ecotoxicology

(2015) Noah M. Reid et al.   Briefings in Functional Genomics

Transcriptome-wide analysis of the response of the thecosome pteropod Clio pyramidata to short-term CO 2 exposure

(2015) Amy E. Maas et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepodPseudocalanus acuspes

(2015) Pierre De Wit et al.   Evolutionary Applications

Transgenerational effects alleviate severe fecundity loss during ocean acidification in a ubiquitous planktonic copepod

(2015) Peter Thor et al.   GLOBAL CHANGE BIOLOGY

Animal behaviour shapes the ecological effects of ocean acidification and warming: moving from individual to community-level responses

(2015) Ivan Nagelkerken et al.   GLOBAL CHANGE BIOLOGY

A review and meta-analysis of the effects of multiple abiotic stressors on marine embryos and larvae

(2015) Rachel Przeslawski et al.   GLOBAL CHANGE BIOLOGY

HighpCO2affects body size, but not gene expression in larvae of the California mussel (Mytilus californianus)

(2015) Morgan W. Kelly et al.   ICES JOURNAL OF MARINE SCIENCE

Interpretation and design of ocean acidification experiments in upwelling systems in the context of carbonate chemistry co-variation with temperature and oxygen

(2015) Jonathan C. P. Reum et al.   ICES JOURNAL OF MARINE SCIENCE

Biochemical responses to ocean acidification contrast between tropical corals with high and low abundances at volcanic carbon dioxide seeps

(2015) J. Strahl et al.   ICES JOURNAL OF MARINE SCIENCE

No evidence for impacts to the molecular ecophysiology of ion or CO 2 regulation in tissues of selected surface-dwelling bivalves in the vicinity of a sub-seabed CO 2 release

(2015) Nicola Pratt et al.   International Journal of Greenhouse Gas Control

Ocean warming and acidification modulate energy budget and gill ion regulatory mechanisms in Atlantic cod (Gadus morhua)

(2015) C. M. Kreiss et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Adaptive variability to low-pH river discharges inAcartia tonsaand stress responses to highPCO2conditions

(2015) Victor M. Aguilera et al.   Marine Ecology-An Evolutionary Perspective

Marine animal behaviour in a high CO2 ocean

(2015) JC Clements et al.   MARINE ECOLOGY PROGRESS SERIES

Expression of calcification and metabolism-related genes in response to elevated pCO2 and temperature in the reef-building coral Acropora millepora

(2015) Melissa M. Rocker et al.   Marine Genomics

Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes

(2015) A. Moya et al.   MOLECULAR ECOLOGY

Impacts of Coastal Acidification on the Pacific Northwest Shellfish Industry and Adaptation Strategies Implemented in Response

(2015) Alan Barton et al.   OCEANOGRAPHY

And on Top of All That… Coping with Ocean Acidification in the Midst of Many Stressors

(2015) Denise Breitberg et al.   OCEANOGRAPHY

A transcriptomic analysis of the response of the arctic pteropod Limacina helicina to carbon dioxide-driven seawater acidification

(2015) Hye Yeon Koh et al.   POLAR BIOLOGY

Experimental ocean acidification alters the allocation of metabolic energy

(2015) T.-C. Francis Pan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine animal behaviour in a high CO2 ocean

(2015) JC Clements et al.   MARINE ECOLOGY PROGRESS SERIES

Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis

(2015) Daniel Spies et al.   Computational and Structural Biotechnology Journal

Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change

(2015) Paulina Kaniewska et al.   PLoS One

Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming

(2014) Lars Harms et al.   BMC GENOMICS

The toxicological application of transcriptomics and epigenomics in zebrafish and other teleosts

(2014) T. D. Williams et al.   Briefings in Functional Genomics

Molecular mechanisms underlying the physiological responses of the cold-water coral Desmophyllum dianthus to ocean acidification

(2014) M. Carreiro-Silva et al.   CORAL REEFS

Large Natural pH, CO2 and O2 Fluctuations in a Temperate Tidal Salt Marsh on Diel, Seasonal, and Interannual Time Scales

(2014) Hannes Baumann et al.   Estuaries and Coasts

Temperature tolerance of different larval stages of the spider crab Hyas araneus exposed to elevated seawater PCO2

(2014) Melanie Schiffer et al.   Frontiers in Zoology

Energy metabolism and regeneration are impaired by seawater acidification in the infaunal brittlestar Amphiura filiformis

(2014) M. Y. Hu et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Responses of the Metabolism of the Larvae of Pocillopora damicornis to Ocean Acidification and Warming

(2014) Emily B. Rivest et al.   PLoS One

The reef-building coral Siderastrea siderea exhibits parabolic responses to ocean acidification and warming

(2014) K. D. Castillo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ocean acidification impacts mussel control on biomineralisation

(2014) Susan C. Fitzer et al.   Scientific Reports

CO2-driven seawater acidification differentially affects development and molecular plasticity along life history of fish (Oryzias latipes)

(2013) Yung-Che Tseng et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

The combined effects of temperature and CO2 lead to altered gene expression in Acropora aspera

(2013) D. Ogawa et al.   CORAL REEFS

Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus

(2013) Qiang Tu et al.   DEVELOPMENTAL BIOLOGY

Is Ocean Acidification an Open-Ocean Syndrome? Understanding Anthropogenic Impacts on Seawater pH

(2013) Carlos M. Duarte et al.   Estuaries and Coasts

Signs of Adaptation to Local pH Conditions across an Environmental Mosaic in the California Current Ecosystem

(2013) M. H. Pespeni et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Multistressor Impacts of Warming and Acidification of the Ocean on Marine Invertebrates' Life Histories

(2013) M. Byrne et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Impacts of ocean acidification on marine shelled molluscs

(2013) Frédéric Gazeau et al.   MARINE BIOLOGY

Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment

(2013) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Adaptation and acclimatization to ocean acidification in marine ectotherms: an in situ transplant experiment with polychaetes at a shallow CO2 vent system

(2013) P. Calosi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The stunting effect of a high CO2 ocean on calcification and development in sea urchin larvae, a synthesis from the tropics to the poles

(2013) M. Byrne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

(2013) Jeremie Vidal-Dupiol et al.   PLoS One

Coral Energy Reserves and Calcification in a High-CO2 World at Two Temperatures

(2013) Verena Schoepf et al.   PLoS One

Consumers mediate the effects of experimental ocean acidification and warming on primary producers

(2013) C. Alsterberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus

(2013) J. L. Padilla-Gamino et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of ocean acidification on the metabolic rates of three species of bivalve from southern coast of China

(2012) Wenguang Liu et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Differential acid–base regulation in various gills of the green crab Carcinus maenas: Effects of elevated environmental pCO2

(2012) Sandra Fehsenfeld et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN

(2012) Melissa H. Pespeni et al.   EVOLUTION

Sensitivity of coral calcification to ocean acidification: a meta-analysis

(2012) Neil C. S. Chan et al.   GLOBAL CHANGE BIOLOGY

Early developmental gene regulation in Strongylocentrotus purpuratus embryos in response to elevated CO2 seawater conditions

(2012) L. M. Hammond et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Elevated pCO2 causes developmental delay in early larval Pacific oysters, Crassostrea gigas

(2012) Emma Timmins-Schiffman et al.   MARINE BIOLOGY

Long-term and trans-life-cycle effects of exposure to ocean acidification in the green sea urchin Strongylocentrotus droebachiensis

(2012) S. Dupont et al.   MARINE BIOLOGY

Ocean acidification reduces biomineralization-related gene expression in the sea urchin, Hemicentrotus pulcherrimus

(2012) Haruko Kurihara et al.   MARINE BIOLOGY

Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism

(2012) Anne K. Hüning et al.   MARINE BIOLOGY

High CO2 and marine animal behaviour: Potential mechanisms and ecological consequences

(2012) Mark Briffa et al.   MARINE POLLUTION BULLETIN

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Seawater Acidification and Elevated Temperature Affect Gene Expression Patterns of the Pearl Oyster Pinctada fucata

(2012) Wenguang Liu et al.   PLoS One

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral

(2012) Paulina Kaniewska et al.   PLoS One

Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification

(2012) M. Stumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Near-future carbon dioxide levels alter fish behaviour by interfering with neurotransmitter function

(2012) Göran E. Nilsson et al.   Nature Climate Change

Effects of elevated seawater p CO2 on gene expression patterns in the gills of the green crab, Carcinus maenas

(2011) Sandra Fehsenfeld et al.   BMC GENOMICS

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Molecular profiling of marine fauna: Integration of omics with environmental assessment of the world's oceans

(2011) Nik Veldhoen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of fishing and acidification-related benthic mortality on the southeast Australian marine ecosystem

(2011) GARY P. GRIFFITH et al.   GLOBAL CHANGE BIOLOGY

Adult exposure influences offspring response to ocean acidification in oysters

(2011) Laura M. Parker et al.   GLOBAL CHANGE BIOLOGY

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification

(2011) S. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Global change ecotoxicology: Identification of early life history bottlenecks in marine invertebrates, variable species responses and variable experimental approaches

(2011) M. Byrne   MARINE ENVIRONMENTAL RESEARCH

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

OCEAN ACIDIFICATION IN THE CALIFORNIA CURRENT SYSTEM

(2011) Claudine Hauri et al.   OCEANOGRAPHY

High-Frequency Dynamics of Ocean pH: A Multi-Ecosystem Comparison

(2011) Gretchen E. Hofmann et al.   PLoS One

Divergent ecosystem responses within a benthic marine community to ocean acidification

(2011) K. J. Kroeker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations

(2011) Katharina E. Fabricius et al.   Nature Climate Change

The Effect of Ocean Acidification on Calcifying Organisms in Marine Ecosystems: An Organism-to-Ecosystem Perspective

(2010) Gretchen E. Hofmann et al.   Annual Review of Ecology Evolution and Systematics

Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms

(2010) Kristy J. Kroeker et al.   ECOLOGY LETTERS

What meta-analysis can tell us about vulnerability of marine biodiversity to ocean acidification?

(2010) S. Dupont et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Effect of pH on Gene Expression and Thermal Tolerance of Early Life History Stages of Red Abalone (Haliotis rufescens)

(2010) MacKenzie L. Zippay et al.   JOURNAL OF SHELLFISH RESEARCH

Moderate seawater acidification does not elicit long-term metabolic depression in the blue mussel Mytilus edulis

(2010) Jörn Thomsen et al.   MARINE BIOLOGY

Populations of the Sydney rock oyster, Saccostrea glomerata, vary in response to ocean acidification

(2010) L. M. Parker et al.   MARINE BIOLOGY

Impact of Ocean Acidification on Energy Metabolism of Oyster, Crassostrea gigas—Changes in Metabolic Pathways and Thermal Response

(2010) Gisela Lannig et al.   Marine Drugs

Ocean Deoxygenation in a Warming World

(2009) Ralph F. Keeling et al.   Annual Review of Marine Science

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

(2009) A. E. Todgham et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Natural Variation in Larval Size and Developmental Rate of the Northern QuahogMercenaria mercenariaand Associated Effects on Larval and Juvenile Fitness

(2009) R. Przeslawski et al.   JOURNAL OF SHELLFISH RESEARCH

Ocean acidification alters skeletogenesis and gene expression in larval sea urchins

(2009) MJ O’Donnell et al.   MARINE ECOLOGY PROGRESS SERIES

Long-term ocean oxygen depletion in response to carbon dioxide emissions from fossil fuels

(2009) Gary Shaffer et al.   Nature Geoscience

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Impacts of ocean acidification on marine fauna and ecosystem processes

(2008) V. J. Fabry et al.   ICES JOURNAL OF MARINE SCIENCE

Predicted impact of ocean acidification on a marine invertebrate: elevated CO2 alters response to thermal stress in sea urchin larvae

(2008) Michael J. O’Donnell et al.   MARINE BIOLOGY

Effects of CO2-driven ocean acidification on the early developmental stages of invertebrates

(2008) H Kurihara   MARINE ECOLOGY PROGRESS SERIES

SpBase: the sea urchin genome database and web site

(2008) R. A. Cameron et al.   NUCLEIC ACIDS RESEARCH

Evidence for Upwelling of Corrosive "Acidified" Water onto the Continental Shelf

(2008) R. A. Feely et al.   SCIENCE