Transcriptomic profiling of adaptive responses to ocean acidification

Lack of genetic introgression between wild and selectively bred Sydney rock oysters Saccostrea glomerata

(2017) JA Thompson et al.   MARINE ECOLOGY PROGRESS SERIES

Lack of genetic introgression between wild and selectively bred Sydney rock oysters Saccostrea glomerata

(2017) JA Thompson et al.   MARINE ECOLOGY PROGRESS SERIES

Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors

(2016) Ramadoss Dineshram et al.   GLOBAL CHANGE BIOLOGY

Rapid transcriptional acclimation following transgenerational exposure of oysters to ocean acidification

(2016) Priscila Goncalves et al.   MOLECULAR ECOLOGY

Molecular signatures of transgenerational response to ocean acidification in a species of reef fish

(2016) Celia Schunter et al.   Nature Climate Change

Combined metabolome and proteome analysis of the mantle tissue from Pacific oyster Crassostrea gigas exposed to elevated pCO2

(2015) Lei Wei et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Interactive effects of seawater acidification and elevated temperature on biomineralization and amino acid metabolism in the mussel Mytilus edulis

(2015) S. Li et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential proteomic responses of selectively bred and wild-type Sydney rock oyster populations exposed to elevated CO2

(2015) E. L. Thompson et al.   MOLECULAR ECOLOGY

RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

(2015) Lani U. Gleason et al.   MOLECULAR ECOLOGY

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative and quantitative proteomics reveal the adaptive strategies of oyster larvae to ocean acidification

(2015) R. Dineshram et al.   PROTEOMICS

Molecular processes of transgenerational acclimation to a warming ocean

(2015) Heather D. Veilleux et al.   Nature Climate Change

Meta-Analysis of Studies Using Suppression Subtractive Hybridization and Microarrays to Investigate the Effects of Environmental Stress on Gene Transcription in Oysters

(2015) Kelli Anderson et al.   PLoS One

Persistence of Positive Carryover Effects in the Oyster, Saccostrea glomerata, following Transgenerational Exposure to Ocean Acidification

(2015) Laura M. Parker et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas

(2014) Emma Timmins-Schiffman et al.   BMC GENOMICS

Multigenerational Exposure to Ocean Acidification during Food Limitation Reveals Consequences for Copepod Scope for Growth and Vital Rates

(2014) Sindre A. Pedersen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Immunomodulation by the interactive effects of cadmium and hypercapnia in marine bivalves Crassostrea virginica and Mercenaria mercenaria

(2014) Anna V. Ivanina et al.   FISH & SHELLFISH IMMUNOLOGY

Proteomic Basis of Stress Responses in the Gills of the Pacific Oyster Crassostrea gigas

(2014) Yang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Within- and transgenerational effects of ocean acidification on life history of marine three-spined stickleback (Gasterosteus aculeatus)

(2014) Franziska M. Schade et al.   MARINE BIOLOGY

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

(2014) Daniel J. Barshis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance

(2014) Ian C. McDowell et al.   PLoS One

Parental effects improve escape performance of juvenile reef fish in a high-CO2 world

(2014) B. J. M. Allan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Family-wide analysis of poly(ADP-ribose) polymerase activity

(2014) Sejal Vyas et al.   Nature Communications

Effects of elevated CO2 on fish behaviour undiminished by transgenerational acclimation

(2014) Megan J. Welch et al.   Nature Climate Change

Interactive effects of elevated temperature and CO2 levels on metabolism and oxidative stress in two common marine bivalves (Crassostrea virginica and Mercenaria mercenaria)

(2013) Omera B. Matoo et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis

(2013) R. Dineshram et al.   MARINE BIOLOGY

Impacts of ocean acidification on marine shelled molluscs

(2013) Frédéric Gazeau et al.   MARINE BIOLOGY

RNA-seq Profiles of Immune Related Genes in the Staghorn Coral Acropora cervicornis Infected with White Band Disease

(2013) Silvia Libro et al.   PLoS One

The Expression and Induction of Heat Shock Proteins in Molluscs

(2013) Dongwu Liu et al.   PROTEIN AND PEPTIDE LETTERS

Assessing the risk of climate change to aquaculture: a case study from south-east Australia

(2013) ZA Doubleday et al.   Aquaculture Environment Interactions

A novel C1qDC protein acting as pattern recognition receptor in scallop Argopecten irradians

(2012) Leilei Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Food availability outweighs ocean acidification effects in juvenileMytilus edulis: laboratory and field experiments

(2012) Jörn Thomsen et al.   GLOBAL CHANGE BIOLOGY

Long-term and trans-life-cycle effects of exposure to ocean acidification in the green sea urchin Strongylocentrotus droebachiensis

(2012) S. Dupont et al.   MARINE BIOLOGY

Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism

(2012) Anne K. Hüning et al.   MARINE BIOLOGY

Analysis of Pacific oyster larval proteome and its response to high-CO2

(2012) R. Dineshram et al.   MARINE POLLUTION BULLETIN

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs

(2012) Fuliang Xie et al.   PLANT MOLECULAR BIOLOGY

Parental environment mediates impacts of increased carbon dioxide on a coral reef fish

(2012) Gabrielle M. Miller et al.   Nature Climate Change

The C1q domain containing proteins of the Mediterranean mussel Mytilus galloprovincialis: A widespread and diverse family of immune-related molecules

(2011) Marco Gerdol et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Adult exposure influences offspring response to ocean acidification in oysters

(2011) Laura M. Parker et al.   GLOBAL CHANGE BIOLOGY

Proteomic response to elevated PCO2 level in eastern oysters, Crassostrea virginica: evidence for oxidative stress

(2011) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Microarray Analysis Highlights Immune Response of Pacific Oysters as a Determinant of Resistance to Summer Mortality

(2011) Elodie Fleury et al.   MARINE BIOTECHNOLOGY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Quantifying Rates of Evolutionary Adaptation in Response to Ocean Acidification

(2011) Jennifer M. Sunday et al.   PLoS One

Rapid transgenerational acclimation of a tropical reef fish to climate change

(2011) J. M. Donelson et al.   Nature Climate Change

Living in the Now: Physiological Mechanisms to Tolerate a Rapidly Changing Environment

(2010) Gretchen E. Hofmann et al.   Annual Review of Physiology

Long-term effects of nutrient and CO2 enrichment on the temperate coral Astrangia poculata (Ellis and Solander, 1786)

(2010) Michael Holcomb et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Populations of the Sydney rock oyster, Saccostrea glomerata, vary in response to ocean acidification

(2010) L. M. Parker et al.   MARINE BIOLOGY

Impact of Ocean Acidification on Energy Metabolism of Oyster, Crassostrea gigas—Changes in Metabolic Pathways and Thermal Response

(2010) Gisela Lannig et al.   Marine Drugs

Elevated level of carbon dioxide affects metabolism and shell formation in oysters Crassostrea virginica (Gmelin)

(2010) E Beniash et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic response of the Pacific oyster Crassostrea gigas to hypoxia

(2010) Rossana Sussarellu et al.   Marine Genomics

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Reduced salinity, but not estuarine acidification, is a cause of immune-suppression in the Sydney rock oyster Saccostrea glomerata

(2009) TJ Green et al.   MARINE ECOLOGY PROGRESS SERIES

Shellfish Face Uncertain Future in High CO2 World: Influence of Acidification on Oyster Larvae Calcification and Growth in Estuaries

(2009) A. Whitman Miller et al.   PLoS One

Transcriptional expression levels of cell stress marker genes in the Pacific oyster Crassostrea gigas exposed to acute thermal stress

(2008) Émilie Farcy et al.   CELL STRESS & CHAPERONES

Effects of CO2-driven ocean acidification on the early developmental stages of invertebrates

(2008) H Kurihara   MARINE ECOLOGY PROGRESS SERIES

OCEAN SCIENCE: Marine Calcifiers in a High-CO2 Ocean

(2008) V. J. Fabry   SCIENCE