Transcriptomics reveal transgenerational effects in purple sea urchin embryos: Adult acclimation to upwelling conditions alters the response of their progeny to differential p CO2 levels

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic

(2017) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Developmental plasticity: re-conceiving the genotype

(2017) Sonia E. Sultan   Interface Focus

Sensitivity of sea urchin fertilization to pH varies across a natural pH mosaic

(2017) Lydia Kapsenberg et al.   Ecology and Evolution

An interplay between plasticity and parental phenotype determines impacts of ocean acidification on a reef fish

(2017) Celia Schunter et al.   Nature Ecology & Evolution

Persistent spatial structuring of coastal ocean acidification in the California Current System

(2017) F. Chan et al.   Scientific Reports

Multiple Stressors in a Changing World: The Need for an Improved Perspective on Physiological Responses to the Dynamic Marine Environment

(2016) Alex R. Gunderson et al.   Annual Review of Marine Science

Beyond the benchtop and the benthos: Dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet®-based pH sensors

(2016) Emily B. Rivest et al.   Ecological Informatics

Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability

(2016) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Transgenerational effects persist down the maternal line in marine sticklebacks: gene expression matches physiology in a warming ocean

(2016) Lisa N.S. Shama et al.   Evolutionary Applications

Transgenerational responses of molluscs and echinoderms to changing ocean conditions

(2016) Pauline M. Ross et al.   ICES JOURNAL OF MARINE SCIENCE

Ocean pH time-series and drivers of variability along the northern Channel Islands, California, USA

(2016) Lydia Kapsenberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Rapid transcriptional acclimation following transgenerational exposure of oysters to ocean acidification

(2016) Priscila Goncalves et al.   MOLECULAR ECOLOGY

Evaluating ‘Plasticity-First’ Evolution in Nature: Key Criteria and Empirical Approaches

(2016) Nicholas A. Levis et al.   TRENDS IN ECOLOGY & EVOLUTION

Molecular signatures of transgenerational response to ocean acidification in a species of reef fish

(2016) Celia Schunter et al.   Nature Climate Change

Thermal environment and maternal effects shape egg size in a freshwater fish

(2016) Zachary S. Feiner et al.   Ecosphere

Effects of Seawater Acidification on Gene Expression: Resolving Broader-Scale Trends in Sea Urchins

(2016) Tyler G. Evans et al.   BIOLOGICAL BULLETIN

Temperature Effects on Reproductive Allocation in the Sandhopper Talorchestia capensis

(2015) Simone Baldanzi et al.   BIOLOGICAL BULLETIN

Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepodPseudocalanus acuspes

(2015) Pierre De Wit et al.   Evolutionary Applications

Transgenerational plasticity mitigates the impact of global warming to offspring sex ratios

(2015) Jennifer M. Donelson et al.   GLOBAL CHANGE BIOLOGY

Transgenerational effects alleviate severe fecundity loss during ocean acidification in a ubiquitous planktonic copepod

(2015) Peter Thor et al.   GLOBAL CHANGE BIOLOGY

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Environmental epigenetics: A promising venue for developing next-generation pollution biomonitoring tools in marine invertebrates

(2015) Victoria Suarez-Ulloa et al.   MARINE POLLUTION BULLETIN

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

And on Top of All That… Coping with Ocean Acidification in the Midst of Many Stressors

(2015) Denise Breitberg et al.   OCEANOGRAPHY

Experimental ocean acidification alters the allocation of metabolic energy

(2015) T.-C. Francis Pan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular processes of transgenerational acclimation to a warming ocean

(2015) Heather D. Veilleux et al.   Nature Climate Change

Trans-generational responses to low pH depend on parental gender in a calcifying tubeworm

(2015) Ackley Lane et al.   Scientific Reports

Persistence of Positive Carryover Effects in the Oyster, Saccostrea glomerata, following Transgenerational Exposure to Ocean Acidification

(2015) Laura M. Parker et al.   PLoS One

Experimental influence of pH on the early life-stages of sea urchins II: increasing parental exposure times gives rise to different responses

(2014) Coleen C. Suckling et al.   INVERTEBRATE REPRODUCTION & DEVELOPMENT

Adult acclimation to combined temperature and pH stressors significantly enhances reproductive outcomes compared to short-term exposures

(2014) Coleen C. Suckling et al.   JOURNAL OF ANIMAL ECOLOGY

Offspring sensitivity to ocean acidification changes seasonally in a coastal marine fish

(2014) CS Murray et al.   MARINE ECOLOGY PROGRESS SERIES

Biological ramifications of climate-change-mediated oceanic multi-stressors

(2014) Philip W. Boyd et al.   Nature Climate Change

Vulnerability of the calcifying larval stage of the Antarctic sea urchinSterechinus neumayerito near-future ocean acidification and warming

(2013) Maria Byrne et al.   GLOBAL CHANGE BIOLOGY

Natural variation and the capacity to adapt to ocean acidification in the keystone sea urchinStrongylocentrotus purpuratus

(2013) Morgan W. Kelly et al.   GLOBAL CHANGE BIOLOGY

Signs of Adaptation to Local pH Conditions across an Environmental Mosaic in the California Current Ecosystem

(2013) M. H. Pespeni et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Impact of ocean acidification on metabolism and energetics during early life stages of the intertidal porcelain crab Petrolisthes cinctipes

(2013) H. A. Carter et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment

(2013) Tyler G. Evans et al.   MOLECULAR ECOLOGY

The stunting effect of a high CO2 ocean on calcification and development in sea urchin larvae, a synthesis from the tropics to the poles

(2013) M. Byrne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus

(2013) J. L. Padilla-Gamino et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis

(2012) Q. Tu et al.   GENOME RESEARCH

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Phenotypic plasticity in evolutionary rescue experiments

(2012) L.-M. Chevin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change

(2012) T. G. Evans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification

(2012) M. Stumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Progression of Ocean Acidification in the California Current System

(2012) N. Gruber et al.   SCIENCE

Phenotypic Plasticity of the Drosophila Transcriptome

(2012) Shanshan Zhou et al.   PLoS Genetics

Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?

(2012) Steven B. Roberts et al.   Frontiers in Physiology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Thermal legacies: transgenerational effects of temperature on growth in a vertebrate

(2011) Santiago Salinas et al.   ECOLOGY LETTERS

Temperature-induced maternal effects and environmental predictability

(2011) S. C. Burgess et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The ocean acidification seascape and its relationship to the performance of calcifying marine invertebrates: Laboratory experiments on the development of urchin larvae framed by environmentally-relevant pCO2/pH

(2011) Pauline C. Yu et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

OCEAN ACIDIFICATION IN THE CALIFORNIA CURRENT SYSTEM

(2011) Claudine Hauri et al.   OCEANOGRAPHY

Coral Larvae under Ocean Acidification: Survival, Metabolism, and Metamorphosis

(2011) Masako Nakamura et al.   PLoS One

Limited potential for adaptation to climate change in a broadly distributed marine crustacean

(2011) M. W. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genes as leaders and followers in evolution

(2011) Tanja Schwander et al.   TRENDS IN ECOLOGY & EVOLUTION

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Impact of Ocean Warming and Ocean Acidification on Larval Development and Calcification in the Sea Urchin Tripneustes gratilla

(2010) Hannah Sheppard Brennand et al.   PLoS One

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Nongenetic Inheritance and Its Evolutionary Implications

(2009) Russell Bonduriansky et al.   Annual Review of Ecology Evolution and Systematics

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

(2009) A. E. Todgham et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Response of sea urchin pluteus larvae (Echinodermata: Echinoidea) to reduced seawater pH: a comparison among a tropical, temperate, and a polar species

(2009) Dana Clark et al.   MARINE BIOLOGY

Ocean Acidification: The Other CO2Problem

(2008) Scott C. Doney et al.   Annual Review of Marine Science

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

TRANSGENERATIONAL PLASTICITY IN THE SEA: CONTEXT-DEPENDENT MATERNAL EFFECTS ACROSS THE LIFE HISTORY

(2008) Dustin J. Marshall   ECOLOGY

Predicted impact of ocean acidification on a marine invertebrate: elevated CO2 alters response to thermal stress in sea urchin larvae

(2008) Michael J. O’Donnell et al.   MARINE BIOLOGY

Near-future level of CO2-driven ocean acidification radically affects larval survival and development in the brittlestar Ophiothrix fragilis

(2008) S Dupont et al.   MARINE ECOLOGY PROGRESS SERIES

Effects of CO2-driven ocean acidification on the early developmental stages of invertebrates

(2008) H Kurihara   MARINE ECOLOGY PROGRESS SERIES

Evidence for Upwelling of Corrosive "Acidified" Water onto the Continental Shelf

(2008) R. A. Feely et al.   SCIENCE