Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

Impact of seawater acidification on pH at the tissue-skeleton interface and calcification in reef corals

(2013) A. A. Venn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Resilience of cold-water scleractinian corals to ocean acidification: Boron isotopic systematics of pH and saturation state up-regulation

(2012) Malcolm McCulloch et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Seawater Acidification and Elevated Temperature Affect Gene Expression Patterns of the Pearl Oyster Pinctada fucata

(2012) Wenguang Liu et al.   PLoS One

Stable Photosymbiotic Relationship under CO2-Induced Acidification in the Acoel Worm Symsagittifera Roscoffensis

(2012) Sam Dupont et al.   PLoS One

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral

(2012) Paulina Kaniewska et al.   PLoS One

Coral resilience to ocean acidification and global warming through pH up-regulation

(2012) Malcolm McCulloch et al.   Nature Climate Change

Prolonged exposure to elevated CO2 promotes growth of the algal symbiont Symbiodinium muscatinei in the intertidal sea anemone Anthopleura elegantissima

(2012) T. Towanda et al.   Biology Open

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

(2011) Nikki Traylor-Knowles et al.   BMC GENOMICS

Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13

(2011) Zhang Wang et al.   BMC GENOMICS

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Response of larval barnacle proteome to CO2-driven seawater acidification

(2011) Kelvin K.W. Wong et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus

(2011) J. Vidal-Dupiol et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification

(2011) S. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Interactive effects of salinity and elevated CO2 levels on juvenile eastern oysters, Crassostrea virginica

(2011) G. H. Dickinson et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Coral biomineralization: From the gene to the environment

(2011) Sylvie Tambutté et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Ocean acidification hotspots: Spatiotemporal dynamics of the seawater CO2 system of eastern Pacific coral reefs

(2011) Derek P. Manzello   LIMNOLOGY AND OCEANOGRAPHY

A New Coral Carbonic Anhydrase in Stylophora pistillata

(2011) Anthony Bertucci et al.   MARINE BIOTECHNOLOGY

Effects of acidified seawater on coral calcification and symbiotic algae on the massive coral Porites australiensis

(2011) Akira Iguchi et al.   MARINE ENVIRONMENTAL RESEARCH

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Sensitivity of coccolithophores to carbonate chemistry and ocean acidification

(2011) L. Beaufort et al.   NATURE

Molecular Analysis, Tissue Profiles, and Seasonal Patterns of Cytosolic and Mitochondrial GPDH in Freeze-Resistant Rainbow Smelt (Osmerus mordax)

(2011) Jason L. Robinson et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Systems Biology Approach inChlamydomonasReveals Connections between Copper Nutrition and Multiple Metabolic Steps

(2011) Madeli Castruita et al.   PLANT CELL

Live Tissue Imaging Shows Reef Corals Elevate pH under Their Calcifying Tissue Relative to Seawater

(2011) Alexander Venn et al.   PLoS One

Food Supply and Seawater pCO2 Impact Calcification and Internal Shell Dissolution in the Blue Mussel Mytilus edulis

(2011) Frank Melzner et al.   PLoS One

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations

(2011) Katharina E. Fabricius et al.   Nature Climate Change

Coral and mollusc resistance to ocean acidification adversely affected by warming

(2011) R. Rodolfo-Metalpa et al.   Nature Climate Change

ClaMS: A Classifier for Metagenomic Sequences

(2011) Amrita Pati et al.   Standards in Genomic Sciences

Physiological and isotopic responses of scleractinian corals to ocean acidification

(2010) Shani Krief et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Effect of pH on Gene Expression and Thermal Tolerance of Early Life History Stages of Red Abalone (Haliotis rufescens)

(2010) MacKenzie L. Zippay et al.   JOURNAL OF SHELLFISH RESEARCH

The basics of acidification: baseline variability of pH on Australian coral reefs

(2010) Monica Gagliano et al.   MARINE BIOLOGY

A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data

(2010) Marcelo V. Kitahara et al.   PLoS One

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

Acquired phototrophy in aquatic protists

(2009) DK Stoecker et al.   AQUATIC MICROBIAL ECOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora

(2009) Alejandro Reyes-Bermudez et al.   BMC EVOLUTIONARY BIOLOGY

Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

(2009) Cécile Sabourault et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

Toll-like receptor 4 signaling pathway can be triggered by grass carp reovirus and Aeromonas hydrophila infection in rare minnow Gobiocypris rarus

(2009) Jianguo Su et al.   FISH & SHELLFISH IMMUNOLOGY

Morphological and compositional changes in the skeletons of new coral recruits reared in acidified seawater: Insights into the biomineralization response to ocean acidification

(2009) Anne L. Cohen et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Marine calcifiers exhibit mixed responses to CO2-induced ocean acidification

(2009) J. B. Ries et al.   GEOLOGY

Declining Coral Calcification on the Great Barrier Reef

(2009) G. De'ath et al.   SCIENCE

Ocean Acidification: The Other CO2Problem

(2008) Scott C. Doney et al.   Annual Review of Marine Science

Heterotrophy in Tropical Scleractinian Corals

(2008) Fanny Houlbrèque et al.   BIOLOGICAL REVIEWS

Calcification and associated physiological parameters during a stress event in the scleractinian coral Stylophora pistillata

(2008) Aurélie Moya et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Coral calcification responds to seawater acidification: a working hypothesis towards a physiological mechanism

(2008) F. Marubini et al.   CORAL REEFS

Carbonic Anhydrase in the Scleractinian CoralStylophora pistillata

(2008) Aurélie Moya et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Specific Expression of BMP2/4 Ortholog in Biomineralizing Tissues of Corals and Action on Mouse BMP Receptor

(2008) Didier Zoccola et al.   MARINE BIOTECHNOLOGY

Genome-wide high throughput analysis of DNA methylation in eukaryotes

(2008) Kyle R. Pomraning et al.   METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Ocean acidification causes bleaching and productivity loss in coral reef builders

(2008) K. R. N. Anthony et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA