Global scale transcriptome analysis reveals differentially expressed genes involve in early somatic embryogenesis in Dimocarpus longan Lour

Insights into the conversion potential of Theobroma cacao L. somatic embryos using quantitative proteomic analysis

(2018) Liliana Alexandra Pila Quinga et al.   SCIENTIA HORTICULTURAE

Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis

(2017) Barbara Wójcikowska et al.   PLANT CELL REPORTS

iTRAQ-based comparative proteomic analysis provides insights into somatic embryogenesis in Gossypium hirsutum L.

(2017) Hua-Guo Zhu et al.   PLANT MOLECULAR BIOLOGY

The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis

(2017) Anneke Horstman et al.   PLANT PHYSIOLOGY

The R2R3-MYB TT2b and the bHLH TT8 genes are the major regulators of proanthocyanidin biosynthesis in the leaves of Lotus species

(2017) Francisco José Escaray et al.   PLANTA

Comparative Transcriptome Analysis of SE initial dedifferentiation in cotton of different SE capability

(2017) Aiping Cao et al.   Scientific Reports

Small RNA and Transcriptome Sequencing Reveal a Potential miRNA-Mediated Interaction Network That Functions during Somatic Embryogenesis in Lilium pumilum DC. Fisch.

(2017) Jing Zhang et al.   Frontiers in Plant Science

Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics

(2017) Yuling Lin et al.   GigaScience

Genome-wide transcriptome profiling of Carica papaya L. embryogenic callus

(2017) Nur Diyana Jamaluddin et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Auxin and nutritional stress coupled somatic embryogenesis in Oldenlandia umbellata L.

(2017) S. R. Saranya Krishnan et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

(2016) Xueping Shi et al.   BMC GENOMICS

Transcriptome profiling and digital gene expression by deep sequencing in early somatic embryogenesis of endangered medicinal Eleutherococcus senticosus Maxim.

(2016) Lei Tao et al.   GENE

AtMYB12 regulates flavonoids accumulation and abiotic stress tolerance in transgenic Arabidopsis thaliana

(2016) Feibing Wang et al.   MOLECULAR GENETICS AND GENOMICS

Differential proteome analysis during early somatic embryogenesis in Musa spp. AAA cv. Grand Naine

(2016) Marimuthu Kumaravel et al.   PLANT CELL REPORTS

Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce

(2016) Igor A. Yakovlev et al.   PLANTA

Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies

(2016) Yuvraj Indoliya et al.   Scientific Reports

New Insight Into Early Somatic Embryogenesis of Mangosteen (Garcinia mangostana) Through de Novo and Comparative Transcriptome Analyses

(2016) Fatemeh Mahdavi-Darvari et al.   Tropical Plant Biology

Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro

(2015) Anushka M Wickramasuriya et al.   BMC GENOMICS

Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor

(2015) Sergio L Florez et al.   BMC PLANT BIOLOGY

CpLEA5, the Late Embryogenesis Abundant Protein Gene from Chimonanthus praecox, Possesses Low Temperature and Osmotic Resistances in Prokaryote and Eukaryotes

(2015) Yiling Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA-Seq screening of differentially-expressed genes during somatic embryogenesis inFragaria×ananassaDuch. ‘Benihopp’

(2015) L. M. Gao et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Identification of putative homologs of Larix decidua to BABYBOOM (BBM), LEAFY COTYLEDON1 (LEC1), WUSCHEL-related HOMEOBOX2 (WOX2) and SOMATIC EMBRYOGENESIS RECEPTOR-like KINASE (SERK) during somatic embryogenesis

(2015) Andrea Rupps et al.   PLANTA

De novo assembly and characterization of global transcriptome of coconut palm (Cocos nucifera L.) embryogenic calli using Illumina paired-end sequencing

(2015) M. K. Rajesh et al.   PROTOPLASMA

Expression of WOX and PIN genes during somatic and zygotic embryogenesis in Medicago truncatula

(2015) V. E. Tvorogova et al.   RUSSIAN JOURNAL OF GENETICS

Comparative quantitative proteomic analysis of embryogenic and non-embryogenic calli in maize suggests the role of oxylipins in plant totipotency

(2014) Miroslava Varhaníková et al.   Journal of Proteomics

Epigenetic regulation and gene markers as signals of early somatic embryogenesis

(2014) Fatemeh Mahdavi-Darvari et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Comparative transcriptome analysis of early somatic embryo formation and seed development in Brazilian pine, Araucaria angustifolia (Bertol.) Kuntze

(2014) Paula Elbl et al.   PLANT CELL TISSUE AND ORGAN CULTURE

MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula

(2014) C. Liu et al.   PLANT PHYSIOLOGY

AtWuschel Promotes Formation of the Embryogenic Callus in Gossypium hirsutum

(2014) Wu Zheng et al.   PLoS One

Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

(2014) Stella A. G. D. Salvo et al.   PLoS One

Comparative proteomic analysis of somatic embryo maturation in Carica papaya L.

(2014) Ellen Vale et al.   Proteome Science

Developmental regulation of Ran 3untranslated region during somatic embryogenesis in Dimocarpus longan Lour

(2014) Zhi-Zhen Fang et al.   SCIENTIA HORTICULTURAE

Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis

(2014) Igor A. Yakovlev et al.   Tree Genetics & Genomes

Analysis of the global transcriptome of longan (Dimocarpus longan Lour.) embryogenic callus using Illumina paired-end sequencing

(2013) Zhongxiong Lai et al.   BMC GENOMICS

Transcriptome Profiling Reveals Auxin and Cytokinin Regulating Somatic Embryogenesis in Different Sister Lines of Cotton Cultivar CCRI24

(2013) Zhenzhen Xu et al.   Journal of Integrative Plant Biology

Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development

(2013) Fangyan Jin et al.   PLANT BIOTECHNOLOGY JOURNAL

Wuschel overexpression promotes somatic embryogenesis and induces organogenesis in cotton (Gossypium hirsutum L.) tissues cultured in vitro

(2013) O. Bouchabké-Coussa et al.   PLANT CELL REPORTS

AGAMOUS-Like15 Promotes Somatic Embryogenesis in Arabidopsis and Soybean in Part by the Control of Ethylene Biosynthesis and Response

(2013) Q. Zheng et al.   PLANT PHYSIOLOGY

Comparative Analysis Reveals Dynamic Changes in miRNAs and Their Targets and Expression during Somatic Embryogenesis in Longan (Dimocarpus longan Lour.)

(2013) Yuling Lin et al.   PLoS One

Extensive Modulation of the Transcription Factor Transcriptome during Somatic Embryogenesis in Arabidopsis thaliana

(2013) Marta Gliwicka et al.   PLoS One

Induced Expression of AtLEC1 and AtLEC2 Differentially Promotes Somatic Embryogenesis in Transgenic Tobacco Plants

(2013) Fengdan Guo et al.   PLoS One

New Insights into Somatic Embryogenesis: LEAFY COTYLEDON1, BABY BOOM1 and WUSCHEL-RELATED HOMEOBOX4 Are Epigenetically Regulated in Coffea canephora

(2013) Geovanny I. Nic-Can et al.   PLoS One

Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton

(2012) Xiyan Yang et al.   BMC PLANT BIOLOGY

Different Auxin Response Machineries Control Distinct Cell Fates in the Early Plant Embryo

(2012) Eike H. Rademacher et al.   DEVELOPMENTAL CELL

Induction of Somatic Embryos in Arabidopsis Requires Local YUCCA Expression Mediated by the Down-Regulation of Ethylene Biosynthesis

(2012) Bo Bai et al.   Molecular Plant

R2R3 MYB transcription factors: key regulators of the flavonoid biosynthetic pathway in grapevine

(2012) Stefan Czemmel et al.   PROTOPLASMA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Two SERK genes are markers of pluripotency in Cyclamen persicum Mill.

(2011) M. Savona et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Role of PIN Auxin Efflux Carriers in Polar Auxin Transport and Accumulation and Their Effect on Shaping Maize Development

(2011) Cristian Forestan et al.   Molecular Plant

A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family

(2011) Eike H. Rademacher et al.   PLANT JOURNAL

Kinetic Basis for the Conjugation of Auxin by a GH3 Family Indole-acetic Acid-Amido Synthetase

(2010) Qingfeng Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Comparative expression pattern analysis of WUSCHEL-related homeobox 2 (WOX2) and WOX8/9 in developing seeds and somatic embryos of the gymnosperm Picea abies

(2010) Joakim Palovaara et al.   NEW PHYTOLOGIST

Characterization of a ZmSERK gene and its relationship to somatic embryogenesis in a maize culture

(2010) Suzhi Zhang et al.   PLANT CELL TISSUE AND ORGAN CULTURE

ZmPIN1-Mediated Auxin Transport Is Related to Cellular Differentiation during Maize Embryogenesis and Endosperm Development

(2010) C. Forestan et al.   PLANT PHYSIOLOGY

Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis

(2010) Y. Matsuzaki et al.   SCIENCE

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Ectopic expression of LEAFY COTYLEDON1-LIKE gene and localized auxin accumulation mark embryogenic competence in epiphyllous plants of Helianthus annuus × H. tuberosus

(2009) A. Chiappetta et al.   ANNALS OF BOTANY

Auxin-inducedWUSexpression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis

(2009) Ying H. Su et al.   PLANT JOURNAL

The Arabidopsis GRF-INTERACTING FACTOR Gene Family Performs an Overlapping Function in Determining Organ Size as Well as Multiple Developmental Properties

(2009) B. H. Lee et al.   PLANT PHYSIOLOGY

SAUR39, a Small Auxin-Up RNA Gene, Acts as a Negative Regulator of Auxin Synthesis and Transport in Rice

(2009) S. Kant et al.   PLANT PHYSIOLOGY

Characterization of VvSERK1, VvSERK2, VvSERK3 and VvL1L genes and their expression during somatic embryogenesis of grapevine (Vitis vinifera L.)

(2008) Paul Schellenbaum et al.   PLANT CELL REPORTS

Characterization of three somatic embryogenesis receptor kinase genes from wheat, Triticum aestivum

(2008) Bhumica Singla et al.   PLANT CELL REPORTS

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Rh-PIP2;1, a Rose Aquaporin Gene, Is Involved in Ethylene-Regulated Petal Expansion

(2008) N. Ma et al.   PLANT PHYSIOLOGY

The MADS-Domain Transcriptional Regulator AGAMOUS-LIKE15 Promotes Somatic Embryo Development in Arabidopsis and Soybean

(2008) D. Thakare et al.   PLANT PHYSIOLOGY