New Insight Into Early Somatic Embryogenesis of Mangosteen (Garcinia mangostana) Through de Novo and Comparative Transcriptome Analyses

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species

(2014) Xingyu Lu et al.   BMC GENOMICS

Epigenetic regulation and gene markers as signals of early somatic embryogenesis

(2014) Fatemeh Mahdavi-Darvari et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Comparative transcriptome analysis of early somatic embryo formation and seed development in Brazilian pine, Araucaria angustifolia (Bertol.) Kuntze

(2014) Paula Elbl et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Alternative induction of de novo shoot organogenesis or somatic embryogenesis from in vitro cultures of mature zygotic embryos of passion fruit (Passiflora edulis Sims) is modulated by the ratio between auxin and cytokinin in the medium

(2014) Diego Ismael Rocha et al.   PLANT CELL TISSUE AND ORGAN CULTURE

AtWuschel Promotes Formation of the Embryogenic Callus in Gossypium hirsutum

(2014) Wu Zheng et al.   PLoS One

Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

(2014) Stella A. G. D. Salvo et al.   PLoS One

A bHLH Complex Controls Embryonic Vascular Tissue Establishment and Indeterminate Growth in Arabidopsis

(2013) Bert De Rybel et al.   DEVELOPMENTAL CELL

Molecular regulation of plant somatic embryogenesis

(2013) Mohamed Elhiti et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Transcriptome Profiling Reveals Auxin and Cytokinin Regulating Somatic Embryogenesis in Different Sister Lines of Cotton Cultivar CCRI24

(2013) Zhenzhen Xu et al.   Journal of Integrative Plant Biology

A proposal to use gamete cycling in vitro to improve crops and livestock

(2013) Seth C Murray et al.   NATURE BIOTECHNOLOGY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development

(2013) Fangyan Jin et al.   PLANT BIOTECHNOLOGY JOURNAL

Biological Activities and Bioavailability of Mangosteen Xanthones: A Critical Review of the Current Evidence

(2013) Fabiola Gutierrez-Orozco et al.   Nutrients

Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton

(2012) Xiyan Yang et al.   BMC PLANT BIOLOGY

Anti-skin cancer properties of phenolic-rich extract from the pericarp of mangosteen (Garcinia mangostana Linn.)

(2012) Jing J. Wang et al.   FOOD AND CHEMICAL TOXICOLOGY

Transcriptome profiling and in silico analysis of somatic embryos in Japanese larch (Larix leptolepis)

(2012) Yuan Zhang et al.   PLANT CELL REPORTS

Somatic embryogenesis of mangosteen

(2012) Emelda Rosseleena Rohani et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcriptional profiling of genes involved in embryogenic, non-embryogenic calluses and somatic embryogenesis of Valencia sweet orange by SSH-based microarray

(2012) Xiao-Xia Ge et al.   PLANTA

Morphological and histological changes during the somatic embryogenesis of mangosteen

(2011) M. Elviana et al.   BIOLOGIA PLANTARUM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

The Role of PIN Auxin Efflux Carriers in Polar Auxin Transport and Accumulation and Their Effect on Shaping Maize Development

(2011) Cristian Forestan et al.   Molecular Plant

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL3 Reveals Its Novel Function in Arabidopsis Development

(2011) X. Ouyang et al.   PLANT CELL

AGAMOUS Terminates Floral Stem Cell Maintenance in Arabidopsis by Directly Repressing WUSCHEL through Recruitment of Polycomb Group Proteins

(2011) X. Liu et al.   PLANT CELL

Somatic embryogenesis and organogenesis in apomictic and sexual Brachiaria brizantha

(2011) G. B. Cabral et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Somatic embryogenesis in tamarillo (Cyphomandra betacea): approaches to increase efficiency of embryo formation and plant development

(2011) Sandra Correia et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Differential gene expression during somatic embryogenesis in the maize (Zea mays L.) inbred line H99

(2011) Lifang Sun et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

The role of auxins in somatic embryogenesis of Abies alba

(2011) Zuzana Vondráková et al.   Open Life Sciences

Regulation of Somatic Embryogenesis in Higher Plants

(2010) Xiyan Yang et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Modulation of embryo-forming capacity in culture through the expression of Brassica genes involved in the regulation of the shoot apical meristem

(2010) Mohamed Elhiti et al.   JOURNAL OF EXPERIMENTAL BOTANY

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Auxin transport routes in plant development

(2009) J. Petrasek et al.   DEVELOPMENT

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Auxin-inducedWUSexpression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis

(2009) Ying H. Su et al.   PLANT JOURNAL

Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis

(2008) Xingchun Wang et al.   CELL RESEARCH

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

NAC Family Proteins NARS1/NAC2 and NARS2/NAM in the Outer Integument Regulate Embryogenesis in Arabidopsis

(2008) T. Kunieda et al.   PLANT CELL

Characterization of VvSERK1, VvSERK2, VvSERK3 and VvL1L genes and their expression during somatic embryogenesis of grapevine (Vitis vinifera L.)

(2008) Paul Schellenbaum et al.   PLANT CELL REPORTS

The MADS-Domain Transcriptional Regulator AGAMOUS-LIKE15 Promotes Somatic Embryo Development in Arabidopsis and Soybean

(2008) D. Thakare et al.   PLANT PHYSIOLOGY