RNA-Seq screening of differentially-expressed genes during somatic embryogenesis inFragaria×ananassaDuch. ‘Benihopp’

RNA-Seq-based transcriptome analysis of dormant flower buds of Chinese cherry (Prunus pseudocerasus)

(2015) Youyin Zhu et al.   GENE

Differential inductions of phenylalanine ammonia-lyase and chalcone synthase during wounding, salicylic acid treatment, and salinity stress in safflower,Carthamus tinctorius

(2014) Sara Dehghan et al.   BIOSCIENCE REPORTS

The carrier AUXIN RESISTANT (AUX1) dominates auxin flux into Arabidopsis protoplasts

(2014) Heidi L. Rutschow et al.   NEW PHYTOLOGIST

Transcriptome analysis of salinity responsiveness in contrasting genotypes of finger millet (Eleusine coracana L.) through RNA-sequencing

(2014) Hifzur Rahman et al.   PLANT MOLECULAR BIOLOGY

Low Medium pH Value Enhances Anthocyanin Accumulation in Malus Crabapple Leaves

(2014) Yanchen Zhang et al.   PLoS One

Characterization of Withania somnifera Leaf Transcriptome and Expression Analysis of Pathogenesis – Related Genes during Salicylic Acid Signaling

(2014) Modhumita Ghosh Dasgupta et al.   PLoS One

Analysis of the global transcriptome of longan (Dimocarpus longan Lour.) embryogenic callus using Illumina paired-end sequencing

(2013) Zhongxiong Lai et al.   BMC GENOMICS

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

AGAMOUS-Like15 Promotes Somatic Embryogenesis in Arabidopsis and Soybean in Part by the Control of Ethylene Biosynthesis and Response

(2013) Q. Zheng et al.   PLANT PHYSIOLOGY

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

(2013) Megan J. Bowman et al.   PLoS One

Influence of Abscisic Acid and Sucrose on Somatic Embryogenesis in CactusCopiapoa tenuissimaRitt. formamostruosa

(2013) J. Lema-Rumińska et al.   TheScientificWorldJOURNAL

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis

(2012) Piyanuch Piyatrakul et al.   BMC PLANT BIOLOGY

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

(2011) Qi Tang et al.   BMC GENOMICS

Identification of genes up-regulated during somatic embryogenesis of cucumber

(2011) Anita Wiśniewska et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Embryogenic potential and expression of embryogenesis-related genes in conifers are affected by treatment with a histone deacetylase inhibitor

(2011) Daniel Uddenberg et al.   PLANTA

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Light-induced expression of genes involved in phenylpropanoid biosynthetic pathways in callus of tea (Camellia sinensis (L.) O. Kuntze)

(2011) YunSheng Wang et al.   SCIENTIA HORTICULTURAE

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis vinifera

(2010) Giorgio Gambino et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

Control of somatic embryogenesis and embryo development by AP2 transcription factors

(2010) Souad El Ouakfaoui et al.   PLANT MOLECULAR BIOLOGY

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Expression of the SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 (SERK1) gene is associated with developmental change in the life cycle of the model legume Medicago truncatula

(2009) K. E. Nolan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15

(2009) Y. Zheng et al.   PLANT CELL

Auxin-inducedWUSexpression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis

(2009) Ying H. Su et al.   PLANT JOURNAL

The polar auxin transport inhibitor NPA impairs embryo morphology and increases the expression of an auxin efflux facilitator protein PIN during Picea abies somatic embryo development

(2009) Inger Hakman et al.   TREE PHYSIOLOGY

Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis

(2008) Xingchun Wang et al.   CELL RESEARCH

Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis

(2008) Yibing Hu et al.   JOURNAL OF PLANT PHYSIOLOGY

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

The MADS-Domain Transcriptional Regulator AGAMOUS-LIKE15 Promotes Somatic Embryo Development in Arabidopsis and Soybean

(2008) D. Thakare et al.   PLANT PHYSIOLOGY

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis

(2008) S. L. Stone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA