Genome-wide transcriptome profiling of Carica papaya L. embryogenic callus

QuantSeq 3′ mRNA sequencing for RNA quantification

(2018) Pamela Moll et al.   NATURE METHODS

Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro

(2015) Anushka M Wickramasuriya et al.   BMC GENOMICS

RNA-Seq screening of differentially-expressed genes during somatic embryogenesis inFragaria×ananassaDuch. ‘Benihopp’

(2015) L. M. Gao et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analysis of Papaya Cell Wall-Related Genes during Fruit Ripening Indicates a Central Role of Polygalacturonases during Pulp Softening

(2014) João Paulo Fabi et al.   PLoS One

Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

(2014) Stella A. G. D. Salvo et al.   PLoS One

2D-DIGE proteome analysis on the platelet proteins of patients with major depression

(2014) Tiao-Lai Huang et al.   Proteome Science

The complex transcriptional landscape of the anucleate human platelet

(2013) Paul F Bray et al.   BMC GENOMICS

Extensive Modulation of the Transcription Factor Transcriptome during Somatic Embryogenesis in Arabidopsis thaliana

(2013) Marta Gliwicka et al.   PLoS One

Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis

(2012) Piyanuch Piyatrakul et al.   BMC PLANT BIOLOGY

A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs

(2012) Ke Xu et al.   GENOMICS

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Digital Transcriptome Analysis of Putative Sex-Determination Genes in Papaya (Carica papaya)

(2012) Naoya Urasaki et al.   PLoS One

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus

(2011) Chong-Jian Chen et al.   RNA Biology

Production of triploid plants of papaya by endosperm culture

(2010) De-Quan Sun et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcript profiling of papaya fruit reveals differentially expressed genes associated with fruit ripening

(2010) João Paulo Fabi et al.   PLANT SCIENCE

Plastidial glycolysis in developing Arabidopsis embryos

(2009) Vasilios M. E. Andriotis et al.   NEW PHYTOLOGIST

Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development

(2009) Hsiang-Chun Lin et al.   PLANT MOLECULAR BIOLOGY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Molecular regulation of somatic embryogenesis in potato: an auxin led perspective

(2008) Sanjeev Kumar Sharma et al.   PLANT MOLECULAR BIOLOGY

Plant regeneration of Carica papaya L. through somatic embryogenesis in response to light quality, gelling agent and phloridzin

(2008) Azucena Ascencio-Cabral et al.   SCIENTIA HORTICULTURAE

Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey

(2007) Brad W. Porter et al.   PLANT SCIENCE