Influence of the Biliary System on Biliary Bacteria Revealed by Bacterial Communities of the Human Biliary and Upper Digestive Tracts

Diversity of Duodenal and Rectal Microbiota in Biopsy Tissues and Luminal Contents in Healthy Volunteers

(2015) Gangping Li et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

The Impact of Bile Duct Cultures on Surgical Site Infections in Pancreatic Surgery

(2015) Torsten Herzog et al.   Surgical Infections

Influence of Proton-Pump Inhibitors on the Luminal Microbiota in the Gastrointestinal Tract

(2015) Ayumi Tsuda et al.   Clinical and Translational Gastroenterology

Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria

(2015) Hongzhang Shen et al.   Scientific Reports

The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes

(2014) Andrea R Ottesen et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Evaluation of the Effectiveness of Endoscopic Retrograde Cholangiopancreatography in Patients with Perihilar Cholangiocarcinoma and Its Effect on Development of Cholangitis

(2014) Serkan İpek et al.   Gastroenterology Research and Practice

Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study

(2013) Tao Wu et al.   BMC GENOMICS

Risk factors for increased antimicrobial resistance: a retrospective analysis of 309 acute cholangitis episodes

(2013) J. Schneider et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

(2012) Nicola Segata et al.   GENOME BIOLOGY

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microbial biofilms associated with biliary stent clogging

(2010) Emilio Guaglianone et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin

(2010) Hélène Marchandin et al.   RESEARCH IN MICROBIOLOGY

Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity

(2009) J. Downes et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of Bacteria Enduring Endodontic Treatment Procedures by a Combined Reverse Transcriptase–Polymerase Chain Reaction and Reverse-Capture Checkerboard Approach

(2009) Isabela N. Rôças et al.   JOURNAL OF ENDODONTICS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH