Rhizosphere Metagenomics of Paspalum scrobiculatum L. (Kodo Millet) Reveals Rhizobiome Multifunctionalities

Metagenomic survey of the bacterial communities in the rhizosphere of three Andean tuber crops

(2019) Eduardo Chica et al.   SYMBIOSIS

Field study reveals core plant microbiota and relative importance of their drivers

(2018) Kelly Hamonts et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptome Analysis Deciphers Multifunctional Genes and Enzymes Linked With the Degradation of Aromatic Compounds and Pesticides in the Wheat Rhizosphere

(2018) Dhananjaya P. Singh et al.   Frontiers in Microbiology

The structure and function of the global citrus rhizosphere microbiome

(2018) Jin Xu et al.   Nature Communications

Natural product discovery from the human microbiome

(2017) Matthew R. Wilson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphorus redox reactions as pinch hitters in microbial metabolism

(2017) Oscar A. Sosa   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Characterization of Antimicrobial-Producing Beneficial Bacteria Isolated from Huanglongbing Escape Citrus Trees

(2017) Nadia Riera et al.   Frontiers in Microbiology

Taxonomic structure and functional association of foxtail millet root microbiome

(2017) Tao Jin et al.   GigaScience

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

(2017) Yunzeng Zhang et al.   Microbiome

Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

(2017) Madangchanok Imchen et al.   Scientific Reports

Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap

(2016) Xian Zhang et al.   BMC GENETICS

Comparative metagenome of a stream impacted by the urbanization phenomenon

(2016) Julliane Dutra Medeiros et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Bioprospecting plant-associated microbiomes

(2016) Christina A. Müller et al.   JOURNAL OF BIOTECHNOLOGY

Natural Products as Sources of New Drugs from 1981 to 2014

(2016) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Metagenomic Analysis Revealed Methylamine and Ureide Utilization of Soybean-Associated Methylobacterium

(2016) Tomoyuki Minami et al.   MICROBES AND ENVIRONMENTS

The evolution of genome mining in microbes – a review

(2016) Nadine Ziemert et al.   NATURAL PRODUCT REPORTS

Plant root-microbe communication in shaping root microbiomes

(2016) Andrew Lareen et al.   PLANT MOLECULAR BIOLOGY

Envirotyping for deciphering environmental impacts on crop plants

(2016) Yunbi Xu   THEORETICAL AND APPLIED GENETICS

From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms

(2016) J. Jacob Parnell et al.   Frontiers in Plant Science

Engineering of Secondary Metabolism

(2015) Sarah E. O'Connor   Annual Review of Genetics

Metagenomic Assessment of the Potential Microbial Nitrogen Pathways in the Rhizosphere of a Mediterranean Forest After a Wildfire

(2015) José F. Cobo-Díaz et al.   MICROBIAL ECOLOGY

Cyanate as an energy source for nitrifiers

(2015) Marton Palatinszky et al.   NATURE

Whole-genome sequencing reveals novel insights into sulfur oxidation in the extremophile Acidithiobacillus thiooxidans

(2014) Huaqun Yin et al.   BMC MICROBIOLOGY

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

(2014) Peter Cimermancic et al.   CELL

Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome

(2014) Regina Joice et al.   Cell Metabolism

Metagenomic analysis reveals microbial diversity and function in the rhizosphere soil of a constructed wetland

(2014) Yaohui Bai et al.   ENVIRONMENTAL TECHNOLOGY

S-linolenoyl glutathione intake extends life-span and stress resistance via Sir-2.1 upregulation in Caenorhabditis elegans

(2014) Roberta Cascella et al.   FREE RADICAL BIOLOGY AND MEDICINE

Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage

(2014) Lin-xing Chen et al.   ISME Journal

GenBank

(2014) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Unravelling the Carbon and Sulphur Metabolism in Coastal Soil Ecosystems Using Comparative Cultivation-Independent Genome-Level Characterisation of Microbial Communities

(2014) Basit Yousuf et al.   PLoS One

Chromatographic Determination of Nanomolar Cyanate Concentrations in Estuarine and Sea Waters by Precolumn Fluorescence Derivatization

(2013) Brittany Widner et al.   ANALYTICAL CHEMISTRY

Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites

(2013) Kyu-Sang Hwang et al.   BIOTECHNOLOGY ADVANCES

Metagenomic Profiles of Antibiotic Resistance Genes (ARGs) between Human Impacted Estuary and Deep Ocean Sediments

(2013) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Aspects of nitrogen-fixingActinobacteria, in particular free-living and symbioticFrankia

(2013) Anita Sellstedt et al.   FEMS MICROBIOLOGY LETTERS

Distribution and expression of the cyanate acquisition potential among cyanobacterial populations in oligotrophic marine waters

(2013) Nina A. Kamennaya et al.   LIMNOLOGY AND OCEANOGRAPHY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Screening for Aromatic Compound-Responsive Transcriptional Regulators

(2013) Taku Uchiyama et al.   PLoS One

Cinnamic Acid Increases Lignin Production and Inhibits Soybean Root Growth

(2013) Victor Hugo Salvador et al.   PLoS One

Metagenomic Profiling of Antibiotic Resistance Genes and Mobile Genetic Elements in a Tannery Wastewater Treatment Plant

(2013) Zhu Wang et al.   PLoS One

Evidence for Niche Partitioning Revealed by the Distribution of Sulfur Oxidation Genes Collected from Areas of a Terrestrial Sulfidic Spring with Differing Geochemical Conditions

(2012) Brendan Headd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nuclear glutathione

(2012) José Luis García-Giménez et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Pyochelin, a siderophore of Pseudomonas aeruginosa: Physicochemical characterization of the iron(iii), copper(ii) and zinc(ii) complexes

(2012) Jérémy Brandel et al.   DALTON TRANSACTIONS

Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms

(2012) Mark Dopson et al.   ENVIRONMENTAL MICROBIOLOGY

Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes usingsoxB as a functional molecular marker

(2012) Tatjana P. Tourova et al.   FEMS MICROBIOLOGY ECOLOGY

Thoughts and facts about antibiotics: Where we are now and where we are heading

(2012) János Bérdy   JOURNAL OF ANTIBIOTICS

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic insights into chlorination effects on microbial antibiotic resistance in drinking water

(2012) Peng Shi et al.   WATER RESEARCH

Phylogenetic perspectives of nitrogen-fixing actinobacteria

(2011) Maher Gtari et al.   ARCHIVES OF MICROBIOLOGY

Metagenomic exploration of antibiotic resistance in soil

(2011) Jean-Michel Monier et al.   CURRENT OPINION IN MICROBIOLOGY

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere

(2011) Pankaj Trivedi et al.   ISME Journal

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

(2011) Erik Kristiansson et al.   PLoS One

Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods

(2011) Petra Marschner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture

(2010) Céline Masclaux-Daubresse et al.   ANNALS OF BOTANY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Functional characterization of a gene cluster involved in gentisate catabolism in Rhodococcus sp. strain NCIMB 12038

(2010) Ting-Ting Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Environmental transcriptome analysis reveals physiological differences between biofilm and planktonic modes of life of the iron oxidizing bacteria Leptospirillum spp. in their natural microbial community

(2010) Mercedes Moreno-Paz et al.   BMC GENOMICS

Recent application of metagenomic approaches toward the discovery of antimicrobials and other bioactive small molecules

(2010) Jacob J Banik et al.   CURRENT OPINION IN MICROBIOLOGY

Natural Products Version 2.0: Connecting Genes to Molecules

(2010) Christopher T. Walsh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Siderophore-mediated iron acquisition in Bacillus anthracis and related strains

(2010) K. Hotta et al.   MICROBIOLOGY-SGM

Bacterial phenylalanine and phenylacetate catabolic pathway revealed

(2010) R. Teufel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters

(2010) Juan Pablo Gomez-Escribano et al.   Microbial Biotechnology

Analysis of Achromobactin Biosynthesis by Pseudomonas syringae pv. syringae B728a

(2009) A. D. Berti et al.   JOURNAL OF BACTERIOLOGY

Isolation and identification of a carbazole degradation gene cluster from Sphingomonas sp.JS1

(2009) Meiying Yang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Heterocyclic aromatic amine pesticide use and human cancer risk: Results from the U.S. Agricultural Health Study

(2008) Stella Koutros et al.   INTERNATIONAL JOURNAL OF CANCER

The ecology and biotechnology of sulphate-reducing bacteria

(2008) Gerard Muyzer et al.   NATURE REVIEWS MICROBIOLOGY

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA