Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment

(2017) Olivia Rasigraf et al.   MicrobiologyOpen

Sulfide-oxidizing bacteria establishment in an innovative microaerobic reactor with an internal silicone membrane for sulfur recovery from wastewater

(2016) F. Valdés et al.   BIODEGRADATION

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

(2016) Hanin Alzubaidy et al.   GENE

Distinctive Tropical Forest Variants Have Unique Soil Microbial Communities, But Not Always Low Microbial Diversity

(2016) Binu M. Tripathi et al.   Frontiers in Microbiology

Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle

(2014) G. Alfaro-Espinoza et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing

(2014) Pijush Basak et al.   MICROBIAL ECOLOGY

GenBank

(2014) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments

(2014) Babu Z. Fathepure   Frontiers in Microbiology

Metagenomic Profiles of Antibiotic Resistance Genes (ARGs) between Human Impacted Estuary and Deep Ocean Sediments

(2013) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Degradation potential and microbial community structure of heavy oil-enriched microbial consortia from mangrove sediments in Okinawa, Japan

(2013) Hernando P. Bacosa et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

Identification and Characterization of Xiamycin A and Oxiamycin Gene Cluster Reveals an Oxidative Cyclization Strategy Tailoring Indolosesquiterpene Biosynthesis

(2012) Huixian Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

(2012) Fernando Dini Andreote et al.   PLoS One

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)

(2012) Cliff Han et al.   Standards in Genomic Sciences

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE

(2012) Kevin P. Keegan et al.   PLoS Computational Biology

Genomic Potential of Marinobacter aquaeolei, a Biogeochemical “Opportunitroph”

(2011) Esther Singer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A new staurosporine analog from ActinomycetesStreptomycessp. (172614)

(2011) Xiao-Bin Li et al.   JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH

A family of multicyclic indolosesquiterpenes from a bacterial endophyte

(2011) Ling Ding et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

High archaeal diversity in Antarctic circumpolar deep waters

(2011) Laura Alonso-Sáez et al.   Environmental Microbiology Reports

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Xiamycin, a pentacyclic indolosesquiterpene with selective anti-HIV activity from a bacterial mangrove endophyte

(2010) Ling Ding et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Status and distribution of mangrove forests of the world using earth observation satellite data

(2010) C. Giri et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara

(2010) Achim Quaiser et al.   ISME Journal

p-Aminoacetophenonic Acids Produced by a Mangrove Endophyte Streptomyces sp. (strain HK10552)

(2010) Fangfang Wang et al.   MOLECULES

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Isolation of an unusual metabolite 2-allyloxyphenol from a marine actinobacterium, its biological activities and applications

(2009) Meyyappan Arumugam et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE