A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome

Quantifying the impact of pesticides on learning and memory in bees

(2018) Harry Siviter et al.   JOURNAL OF APPLIED ECOLOGY

Does plant—Microbe interaction confer stress tolerance in plants: A review?

(2018) Akhilesh Kumar et al.   MICROBIOLOGICAL RESEARCH

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere

(2018) Tuesday Simmons et al.   Jove-Journal of Visualized Experiments

Hazardous effects of chemical pesticides on human health–Cancer and other associated disorders

(2018) Akash Sabarwal et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Exposure to pesticides and the associated human health effects

(2017) Ki-Hyun Kim et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes

(2017) Christian Santos-Medellín et al.   mBio

The impact of Mexican competition on the U.S. strawberry industry

(2017) Dong Hee Suh et al.   International Food and Agribusiness Management Review

Effects of different nitrogen additions on soil microbial communities in different seasons in a boreal forest

(2017) Guoyong Yan et al.   Ecosphere

Perspectives and Challenges of Microbial Application for Crop Improvement

(2017) Salme Timmusk et al.   Frontiers in Plant Science

Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar

(2017) Amit K. Jaiswal et al.   Scientific Reports

Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review

(2016) Pravin Vejan et al.   MOLECULES

Biochar-stimulated plant performance is strongly linked to microbial diversity and metabolic potential in the rhizosphere

(2016) Max Kolton et al.   NEW PHYTOLOGIST

The interaction between iron nutrition, plant species and soil type shapes the rhizosphere microbiome

(2016) Youry Pii et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection

(2016) Caroline De Tender et al.   Frontiers in Microbiology

A comprehensive review of constraints to improved management of fertilizers in China and mitigation of diffuse water pollution from agriculture

(2015) L.E.D. Smith et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Impact of biological amendments on Agrobacterium tumefaciens survival in soil

(2015) S.L. Strauss et al.   APPLIED SOIL ECOLOGY

Microbial interactions in the rhizosphere: beneficial influences of plant growth-promoting rhizobacteria on nutrient acquisition process. A review

(2015) Youry Pii et al.   BIOLOGY AND FERTILITY OF SOILS

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

A Greenhouse Assay on the Effect of Applied Urea Amount on the Rhizospheric Soil Bacterial Communities

(2015) Shuanghua Shang et al.   INDIAN JOURNAL OF MICROBIOLOGY

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Ecological role of bacterial inoculants and their potential impact on soil microbial diversity

(2015) Adriana Ambrosini et al.   PLANT AND SOIL

Agricultural insecticides threaten surface waters at the global scale

(2015) Sebastian Stehle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake

(2015) María Touceda-González et al.   SOIL BIOLOGY & BIOCHEMISTRY

Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry

(2015) Xiangming Xu et al.   Horticulture Research

Soil type-dependent effects of a potential biocontrol inoculant on indigenous bacterial communities in the rhizosphere of field-grown lettuce

(2014) Susanne Schreiter et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Diversity in the Rhizosphere of Cucumbers Grown in Soils Covering a Wide Range of Cucumber Cropping Histories and Environmental Conditions

(2014) Yongqiang Tian et al.   MICROBIAL ECOLOGY

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment

(2014) José A. Siles et al.   PLoS One

Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment

(2014) Amélie Deredjian et al.   Frontiers in Cellular and Infection Microbiology

Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

(2014) Devin Coleman-Derr et al.   Frontiers in Microbiology

Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils

(2014) Akihiro Koyama et al.   Frontiers in Microbiology

Insights into Denitrification in Methylotenera mobilis from Denitrification Pathway and Methanol Metabolism Mutants

(2013) I. Mustakhimov et al.   JOURNAL OF BACTERIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Microbial Diversity and Structure Are Drivers of the Biological Barrier Effect against Listeria monocytogenes in Soil

(2013) Anne-Laure Vivant et al.   PLoS One

Microbial Inoculants and Their Impact on Soil Microbial Communities: A Review

(2013) Darine Trabelsi et al.   Biomed Research International

Recent Molecular Advances on Downstream Plant Responses to Abiotic Stress

(2012) Sávio Pinho dos Reis et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Crop losses due to diseases and their implications for global food production losses and food security

(2012) Serge Savary et al.   Food Security

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effect of on-field inoculation of Phaseolus vulgaris with rhizobia on soil bacterial communities

(2011) Darine Trabelsi et al.   FEMS MICROBIOLOGY ECOLOGY

Climate change, plant diseases and food security: an overview

(2011) S. Chakraborty et al.   PLANT PATHOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Methylophilaceaelink methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis

(2009) Marina G. Kalyuhznaya et al.   Environmental Microbiology Reports

The role of Variovorax and other Comamonadaceae in sulfur transformations by microbial wheat rhizosphere communities exposed to different sulfur fertilization regimes

(2008) Achim Schmalenberger et al.   ENVIRONMENTAL MICROBIOLOGY

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE