Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection

Effects of biochar and compost amendments on soil physico-chemical properties and the total community within a temperate agricultural soil

(2016) Ibrahim S. Abujabhah et al.   APPLIED SOIL ECOLOGY

Biological, physicochemical and plant health responses in lettuce and strawberry in soil or peat amended with biochar

(2016) Caroline A. De Tender et al.   APPLIED SOIL ECOLOGY

Biochar amendment before or after composting affects compost quality and N losses, but not P plant uptake

(2016) Bart Vandecasteele et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Investigating the effect of different soilless substrates on strawberry productivity and fruit composition

(2016) Pedro Palencia et al.   SCIENTIA HORTICULTURAE

Biochars reduce infection rates of the root-lesion nematode Pratylenchus penetrans and associated biomass loss in carrot

(2016) Carmen George et al.   SOIL BIOLOGY & BIOCHEMISTRY

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology

(2016) Jane Debode et al.   Frontiers in Microbiology

Biochar Treatment Resulted in a Combined Effect on Soybean Growth Promotion and a Shift in Plant Growth Promoting Rhizobacteria

(2016) Dilfuza Egamberdieva et al.   Frontiers in Microbiology

Biological control in the microbiome era: Challenges and opportunities

(2015) Sébastien Massart et al.   BIOLOGICAL CONTROL

Biochar-amended potting medium reduces the susceptibility of rice to root-knot nematode infections

(2015) Wen-kun Huang et al.   BMC PLANT BIOLOGY

Influence of biochar application on nutritional quality of tomato (Lycopersicon esculentum)

(2015) Raffaella Petruccelli et al.   Crop & Pasture Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Antioxidant enzymes and fatty acid composition as related to disease resistance in postharvest loquat fruit

(2014) Shifeng Cao et al.   FOOD CHEMISTRY

More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar

(2014) Maud Viger et al.   Global Change Biology Bioenergy

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Non-monotonic influence of biochar dose on bean seedling growth and susceptibility to Rhizoctonia solani: the “Shifted Rmax-Effect”

(2014) Amit K. Jaiswal et al.   PLANT AND SOIL

Monitoring rhizosphere microbial communities in healthy and Pythium ultimum inoculated tomato plants in soilless growing systems

(2014) A.K. Rosberg et al.   SCIENTIA HORTICULTURAE

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Organic potted plants amended with biochar: its effect on growth and Pythium colonization

(2013) Valérie Gravel et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

QTL Analysis of High Thermotolerance with Superior and Downgraded Parental Yeast Strains Reveals New Minor QTLs and Converges on Novel Causative Alleles Involved in RNA Processing

(2013) Yudi Yang et al.   PLoS Genetics

Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter

(2013) C. Ryan Penton et al.   Frontiers in Microbiology

Effect of fungicides on epiphytic yeasts associated with strawberry

(2013) Jane Debode et al.   MicrobiologyOpen

Effects of nitrogen input and deficit irrigation within the commercial acceptable range on susceptibility of strawberry leaves to powdery mildew

(2012) Xiangming Xu et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

COLONIZATION AND MODULATION OF HOST GROWTH AND METAL UPTAKE BY ENDOPHYTIC BACTERIA OFSEDUM ALFREDII

(2012) Xincheng Zhang et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Biochar mediates systemic response of strawberry to foliar fungal pathogens

(2012) Yael Meller Harel et al.   PLANT AND SOIL

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Impact of Biochar Application to Soil on the Root-Associated Bacterial Community Structure of Fully Developed Greenhouse Pepper Plants

(2011) Max Kolton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Biochar induced soil microbial community change: Implications for biogeochemical cycling of carbon, nitrogen and phosphorus

(2011) Craig R. Anderson et al.   PEDOBIOLOGIA

Biochar effects on soil biota – A review

(2011) Johannes Lehmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic characterization of root-nodule bacteria associated with Acacia salicina and A. stenophylla (Mimosaceae) across south-eastern Australia

(2010) M. S. Hoque et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Induction of Systemic Resistance in Plants by Biochar, a Soil-Applied Carbon Sequestering Agent

(2010) Yigal Elad et al.   PHYTOPATHOLOGY

Contrasted responses of Botrytis cinerea isolates developing on tomato plants grown under different nitrogen nutrition regimes

(2010) F. Lecompte et al.   PLANT PATHOLOGY

Auxin and Plant-Microbe Interactions

(2010) S. Spaepen et al.   Cold Spring Harbor Perspectives in Biology

Auxin Control of Root Development

(2010) P. Overvoorde et al.   Cold Spring Harbor Perspectives in Biology

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Biocontrole de doenças de parte aérea do tomateiro por Nocardioides thermolilacinus

(2009) Renato Carrer Filho et al.   Tropical Plant Pathology

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS