Programmed DNA elimination of germline development genes in songbirds
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Programmed DNA elimination of germline development genes in songbirds
Authors
Keywords
-
Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-11-29
DOI
10.1038/s41467-019-13427-4
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Discovery of the First Germline-Restricted Gene by Subtractive Transcriptomic Analysis in the Zebra Finch, Taeniopygia guttata
- (2018) Michelle K. Biederman et al. CURRENT BIOLOGY
- Programmed DNA Elimination: Keeping Germline Genes in Their Place
- (2018) Jeramiah J. Smith CURRENT BIOLOGY
- Satellite DNA evolution: old ideas, new approaches
- (2018) Sarah Sander Lower et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
- (2018) Jeramiah J. Smith et al. NATURE GENETICS
- Convergent origination of aDrosophila-like dosage compensation mechanism in a reptile lineage
- (2017) Ray Marin et al. GENOME RESEARCH
- Comparative genome analysis of programmed DNA elimination in nematodes
- (2017) Jianbin Wang et al. GENOME RESEARCH
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy
- (2017) John M. Bell et al. NUCLEIC ACIDS RESEARCH
- De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
- (2017) Jonas Korlach et al. GigaScience
- Evolution of bird genomes-a transposon's-eye view
- (2016) Aurélie Kapusta et al. Annals of the New York Academy of Sciences
- The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
- (2016) Eric W. Deutsch et al. NUCLEIC ACIDS RESEARCH
- High-throughput analysis of the satellitome illuminates satellite DNA evolution
- (2016) Francisco J. Ruiz-Ruano et al. Scientific Reports
- Rates of karyotypic evolution in Estrildid finches differ between island and continental clades
- (2015) Daniel M. Hooper et al. EVOLUTION
- Stable recombination hotspots in birds
- (2015) S. Singhal et al. SCIENCE
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Complete mitochondrial genome of White-rumped MuniaLonchura striata swinhoei(Passeriformes: Estrildidae)
- (2015) Fan Yang et al. Mitochondrial DNA Part A
- A new time tree reveals Earth historys imprint on the evolution of modern birds
- (2015) S. Claramunt et al. Science Advances
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development
- (2014) Xiao Chen et al. CELL
- Histone modifications related to chromosome silencing and elimination during male meiosis in Bengalese finch
- (2014) Lucía del Priore et al. CHROMOSOMA
- Programmed DNA elimination in multicellular organisms
- (2014) Jianbin Wang et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- Correlated variation and population differentiation in satellite DNA abundance among lines ofDrosophila melanogaster
- (2014) Kevin H.-C. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complex evolutionary trajectories of sex chromosomes across bird taxa
- (2014) Q. Zhou et al. SCIENCE
- RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
- (2013) P. Novak et al. BIOINFORMATICS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Large-scale gene function analysis with the PANTHER classification system
- (2013) Huaiyu Mi et al. Nature Protocols
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Genetic Consequences of Programmed Genome Rearrangement
- (2012) Jeramiah J. Smith et al. CURRENT BIOLOGY
- Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells
- (2012) Jianbin Wang et al. DEVELOPMENTAL CELL
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Heterochromatin and histone modifications in the germline-restricted chromosome of the zebra finch undergoing elimination during spermatogenesis
- (2010) Clara Goday et al. CHROMOSOMA
- The genome of a songbird
- (2010) Wesley C. Warren et al. NATURE
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Molecular cloning and characterization of the germline-restricted chromosome sequence in the zebra finch
- (2009) Yuichiro Itoh et al. CHROMOSOMA
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started