Analysis of leaf microbiome composition of near‐isogenic maize lines differing in broad‐spectrum disease resistance

Use and abuse of correlation analyses in microbial ecology

(2019) Alex Carr et al.   ISME Journal

Validation and Characterization of Maize Multiple Disease Resistance QTL

(2019) Lais B. Martins et al.   G3-Genes Genomes Genetics

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Nutrient- and Dose-Dependent Microbiome-Mediated Protection against a Plant Pathogen

(2018) Maureen Berg et al.   CURRENT BIOLOGY

Using Maize Chromosome Segment Substitution Line Populations for the Identification of Loci Associated with Multiple Disease Resistance

(2018) Luis O. Lopez-Zuniga et al.   G3-Genes Genomes Genetics

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

Quantitative Disease Resistance: Dissection and Adoption in Maize

(2017) Qin Yang et al.   Molecular Plant

Leaf bacterial diversity mediates plant diversity and ecosystem function relationships

(2017) Isabelle Laforest-Lapointe et al.   NATURE

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Multiple Disease Resistance in Plants

(2016) Tyr Wiesner-Hanks et al.   Annual Review of Phytopathology

Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

(2016) Yian Gu et al.   BIOLOGY AND FERTILITY OF SOILS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

The durable wheat disease resistance geneLr34confers common rust and northern corn leaf blight resistance in maize

(2016) Justine Sucher et al.   PLANT BIOTECHNOLOGY JOURNAL

Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome

(2016) Bram Beckers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Quantitative Resistance to Biotrophic Filamentous Plant Pathogens: Concepts, Misconceptions, and Mechanisms

(2015) Rients E. Niks et al.   Annual Review of Phytopathology

Biological control in the microbiome era: Challenges and opportunities

(2015) Sébastien Massart et al.   BIOLOGICAL CONTROL

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Common foliar fungi ofPopulus trichocarpamodifyMelampsorarust disease severity

(2015) Posy E. Busby et al.   NEW PHYTOLOGIST

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics

(2015) Françoise Bringel et al.   Frontiers in Microbiology

Field Book: An Open-Source Application for Field Data Collection on Android

(2014) Trevor W. Rife et al.   CROP SCIENCE

Diversity and abundance of phyllosphere bacteria are linked to insect herbivory

(2014) Parris T. Humphrey et al.   MOLECULAR ECOLOGY

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Genome-wide association study of Arabidopsis thaliana leaf microbial community

(2014) Matthew W. Horton et al.   Nature Communications

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

The cuticle and plant defense to pathogens

(2014) Mario Serrano et al.   Frontiers in Plant Science

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene

(2011) R. J. Wisser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Disease Resistance and Quantitative Resistance Loci in Breeding

(2010) Dina A. St.Clair   Annual Review of Phytopathology

Fatty Acid–Derived Signals in Plant Defense

(2009) Aardra Kachroo et al.   Annual Review of Phytopathology

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica

(2008) Michael Fürnkranz et al.   ISME Journal

Shades of gray: the world of quantitative disease resistance

(2008) Jesse A. Poland et al.   TRENDS IN PLANT SCIENCE