Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

Declined soil suppressiveness to Fusarium oxysporum by rhizosphere microflora of cotton in soil sickness

(2015) Xiaogang Li et al.   BIOLOGY AND FERTILITY OF SOILS

Role of polygalacturonic acid and the cooperative effect of caffeic and malic acids on the toxicity of Cu(II) towards triticale plants (× Triticosecale Wittm)

(2015) Giovanni Garau et al.   BIOLOGY AND FERTILITY OF SOILS

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

Manipulating the banana rhizosphere microbiome for biological control of Panama disease

(2015) Chao Xue et al.   Scientific Reports

Root colonization and effect of biocontrol fungus Paecilomyces lilacinus on composition of ammonia-oxidizing bacteria, ammonia-oxidizing archaea and fungal populations of tomato rhizosphere

(2014) Zhen Yu et al.   BIOLOGY AND FERTILITY OF SOILS

Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing

(2014) Lorena M. Lagos et al.   BIOLOGY AND FERTILITY OF SOILS

The role of community and population ecology in applying mycorrhizal fungi for improved food security

(2014) Alia Rodriguez et al.   ISME Journal

De-coupling of root–microbiome associations followed by antagonist inoculation improves rhizosphere soil suppressiveness

(2013) Meihua Qiu et al.   BIOLOGY AND FERTILITY OF SOILS

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Root Exudates from Grafted-Root Watermelon Showed a Certain Contribution in Inhibiting Fusarium oxysporum f. sp. niveum

(2013) Ning Ling et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Nutritional immunity: transition metals at the pathogen–host interface

(2012) M. Indriati Hood et al.   NATURE REVIEWS MICROBIOLOGY

p-Coumaric Acid Influenced Cucumber Rhizosphere Soil Microbial Communities and the Growth of Fusarium oxysporum f.sp. cucumerinum Owen

(2012) Xingang Zhou et al.   PLoS One

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The In Planta Transcriptome of Ralstonia solanacearum: Conserved Physiological and Virulence Strategies during Bacterial Wilt of Tomato

(2012) J. M. Jacobs et al.   mBio

Plant- and Microbe-Derived Compounds Affect the Expression of Genes Encoding Antifungal Compounds in a Pseudomonad with Biocontrol Activity

(2011) Patrice de Werra et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficacy of Bacillus-fortified organic fertiliser in controlling bacterial wilt of tomato in the field

(2011) Zhong Wei et al.   APPLIED SOIL ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere

(2011) Pankaj Trivedi et al.   ISME Journal

Retraction Note to: Mediation of pathogen resistance by exudation of antimicrobials from roots

(2011) Harsh P. Bais et al.   NATURE

Ralstonia solanacearum Extracellular Polysaccharide Is a Specific Elicitor of Defense Responses in Wilt-Resistant Tomato Plants

(2011) Annett Milling et al.   PLoS One

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plants Respond to Pathogen Infection by Enhancing the Antifungal Gene Expression of Root-Associated Bacteria

(2010) Alexandre Jousset et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Paenibacillus polymyxa SQR-21 systemically affects root exudates of watermelon to decrease the conidial germination of Fusarium oxysporum f.sp. niveum

(2010) Ning Ling et al.   PLANT AND SOIL

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

De novo biosynthesis of defense root exudates in response to Fusarium attack in barley

(2009) Arnaud Lanoue et al.   NEW PHYTOLOGIST

An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota

(2009) D. V. Badri et al.   PLANT PHYSIOLOGY

The bacterial community of tomato rhizosphere is modified by inoculation with arbuscular mycorrhizal fungi but unaffected by soil enrichment with mycorrhizal root exudates or inoculation with Phytophthora nicotianae

(2009) Laëtitia Lioussanne et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of amendments with different phenolic acids on soil microbial biomass, activity, and community diversity

(2008) X.H. Qu et al.   APPLIED SOIL ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY