Towards comparative analyses of salamander limb regeneration

Epithelial to mesenchymal transition is mediated by both TGF-β canonical and non-canonical signaling during axolotl limb regeneration

(2019) Fadi Sader et al.   Scientific Reports

A chromosome-scale assembly of the axolotl genome

(2019) Jeramiah J. Smith et al.   GENOME RESEARCH

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

(2019) Masatoshi Matsunami et al.   DNA RESEARCH

HDAC Regulates Transcription at the Outset of Axolotl Tail Regeneration

(2019) S. Randal Voss et al.   Scientific Reports

NvERTx: a gene expression database to compare embryogenesis and regeneration in the sea anemoneNematostella vectensis

(2018) Jacob F. Warner et al.   DEVELOPMENT

Transcriptional landscapes of Axolotl ( Ambystoma mexicanum )

(2018) Juan Caballero-Pérez et al.   DEVELOPMENTAL BIOLOGY

Early limb patterning in the direct-developing salamander Plethodon cinereus revealed by sox9 and col2a1

(2018) Ryan R. Kerney et al.   EVOLUTION & DEVELOPMENT

Novel erythrocyte clumps revealed by an orphan gene Newtic1 in circulating blood and regenerating limbs of the adult newt

(2018) Roman M. Casco-Robles et al.   Scientific Reports

zfRegeneration: a database for gene expression profiling during regeneration

(2018) Rocío Nieto-Arellano et al.   BIOINFORMATICS

Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research

(2018) Claudia M. Arenas Gómez et al.   BMC GENOMICS

Cas9 ribonucleoprotein complex allows direct and rapid analysis of coding and noncoding regions of target genes in Pleurodeles waltl development and regeneration

(2018) Miyuki Suzuki et al.   DEVELOPMENTAL BIOLOGY

Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma

(2018) Varun B. Dwaraka et al.   GENOMICS

The axolotl genome and the evolution of key tissue formation regulators

(2018) Sergej Nowoshilow et al.   NATURE

Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration

(2018) Tobias Gerber et al.   SCIENCE

Amputation-induced reactive oxygen species signaling is required for axolotl tail regeneration

(2018) Nour W. Al Haj Baddar et al.   DEVELOPMENTAL DYNAMICS

Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution

(2018) Nicholas D. Leigh et al.   Nature Communications

Genome Expression Balance in a Triploid Trihybrid Vertebrate

(2017) Kyle E. McElroy et al.   Genome Biology and Evolution

Efficient gene knockin in axolotl and its use to test the role of satellite cells in limb regeneration

(2017) Ji-Feng Fei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for complex life cycle constraints on salamander body form diversification

(2017) Ronald M. Bonett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chasing the recipe for a pro-regenerative immune system

(2017) James W. Godwin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration

(2017) Ahmed Elewa et al.   Nature Communications

Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum

(2017) M. Ryan Woodcock et al.   Scientific Reports

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Transcriptome analysis illuminates the nature of the intracellular interaction in a vertebrate-algal symbiosis

(2017) John A Burns et al.   eLife

Lineage tracing of genome-edited alleles reveals high fidelity axolotl limb regeneration

(2017) Grant Parker Flowers et al.   eLife

Activation of Smad2 but not Smad3 is required to mediate TGF-β signaling during axolotl limb regeneration

(2016) Jean-François Denis et al.   DEVELOPMENT

Neuregulin-1 signaling is essential for nerve-dependent axolotl limb regeneration

(2016) Johanna E. Farkas et al.   DEVELOPMENT

Live Imaging of Axolotl Digit Regeneration Reveals Spatiotemporal Choreography of Diverse Connective Tissue Progenitor Pools

(2016) Joshua D. Currie et al.   DEVELOPMENTAL CELL

MARCKS-like protein is an initiating molecule in axolotl appendage regeneration

(2016) Takuji Sugiura et al.   NATURE

Generation of AlbinoCynops pyrrhogasterby Genomic Editing of thetyrosinaseGene

(2016) Keisuke Nakajima et al.   ZOOLOGICAL SCIENCE

A developmentally regulated switch from stem cells to dedifferentiation for limb muscle regeneration in newts

(2016) Hibiki Vincent Tanaka et al.   Nature Communications

REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer

(2016) Min Zhao et al.   Scientific Reports

Using Ambystoma mexicanum (Mexican axolotl) embryos, chemical genetics, and microarray analysis to identify signaling pathways associated with tissue regeneration

(2015) Larissa V. Ponomareva et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Deep-time evolution of regeneration and preaxial polarity in tetrapod limb development

(2015) Nadia B. Fröbisch et al.   NATURE

An orphan gene is necessary for preaxial digit formation during salamander limb development

(2015) Anoop Kumar et al.   Nature Communications

Identification of the orphan gene Prod 1 in basal and other salamander families

(2015) Jie Geng et al.   EvoDevo

Recurrent turnover of senescent cells during regeneration of a complex structure

(2015) Maximina H Yun et al.   eLife

Highly efficient targeted mutagenesis in axolotl using Cas9 RNA-guided nuclease

(2014) G. P. Flowers et al.   DEVELOPMENT

A Transcriptome for the Study of Early Processes of Retinal Regeneration in the Adult Newt, Cynops pyrrhogaster

(2014) Kenta Nakamura et al.   PLoS One

Early evolution of limb regeneration in tetrapods: evidence from a 300-million-year-old amphibian

(2014) N. B. Frobisch et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CRISPR-Mediated Genomic Deletion of Sox2 in the Axolotl Shows a Requirement in Spinal Cord Neural Stem Cell Amplification during Tail Regeneration

(2014) Ji-Feng Fei et al.   Stem Cell Reports

De novo transcriptome sequencing of axolotl blastema for identification of differentially expressed genes during limb regeneration

(2013) Cheng-Han Wu et al.   BMC GENOMICS

Fundamental Differences in Dedifferentiation and Stem Cell Recruitment during Skeletal Muscle Regeneration in Two Salamander Species

(2013) Tatiana Sandoval-Guzmán et al.   Cell Stem Cell

Pseudotyped retroviruses for infecting axolotl in vivo and in vitro

(2013) J. L. Whited et al.   DEVELOPMENT

Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration

(2013) Toshinori Hayashi et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens

(2013) Ilgar Abdullayev et al.   EXPERIMENTAL CELL RESEARCH

Macrophages are required for adult salamander limb regeneration

(2013) James W. Godwin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

(2013) Ron Stewart et al.   PLoS Computational Biology

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration

(2013) Mario Looso et al.   GENOME BIOLOGY

Germline Transgenic Methods for Tracking Cells and Testing Gene Function during Regeneration in the Axolotl

(2013) Shahryar Khattak et al.   Stem Cell Reports

Three-dimensional limb joint mobility in the early tetrapod Ichthyostega

(2012) Stephanie E. Pierce et al.   NATURE

Limb Regeneration: A New Development?

(2011) Eugen Nacu et al.   Annual Review of Cell and Developmental Biology

Salamander limb development: Integrating genes, morphology, and fossils

(2011) Nadia B. Fröbisch et al.   DEVELOPMENTAL DYNAMICS

Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum) gill and lung tissues as revealed by pyrosequencing

(2011) Soo Hyung Eo et al.   GENE

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ossification patterns in the tetrapod limb - conservation and divergence from morphogenetic events

(2010) Nadia B. Fröbisch   BIOLOGICAL REVIEWS

Evidence for the Local Evolution of Mechanisms Underlying Limb Regeneration in Salamanders

(2010) A. Acely Garza-Garcia et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Functional convergence of signalling by GPI-anchored and anchorless forms of a salamander protein implicated in limb regeneration

(2010) R. A. Blassberg et al.   JOURNAL OF CELL SCIENCE

A mechanical analysis of a hind leg of a frog (Rana temporaria)

(2010) Lesley J. Calow et al.   JOURNAL OF ZOOLOGY

What Salamanders Have Taught Us About Evolution

(2009) David B. Wake   Annual Review of Ecology Evolution and Systematics

Proteomic analysis of blastema formation in regenerating axolotl limbs

(2009) Nandini Rao et al.   BMC BIOLOGY

Cholesterol Metabolism: the Main Pathway Acting Downstream of Cytochrome P450 Oxidoreductase in Skeletal Development of the Limb

(2009) K. Schmidt et al.   MOLECULAR AND CELLULAR BIOLOGY

Higher-level salamander relationships and divergence dates inferred from complete mitochondrial genomes

(2009) Peng Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cells keep a memory of their tissue origin during axolotl limb regeneration

(2009) Martin Kragl et al.   NATURE

Neurotrophic regulation of epidermal dedifferentiation during wound healing and limb regeneration in the axolotl (Ambystoma mexicanum)

(2008) A. Satoh et al.   DEVELOPMENTAL BIOLOGY

A stem batrachian from the Early Permian of Texas and the origin of frogs and salamanders

(2008) Jason S. Anderson et al.   NATURE