A chromosome-scale assembly of the axolotl genome

Transcriptional landscapes of Axolotl ( Ambystoma mexicanum )

(2018) Juan Caballero-Pérez et al.   DEVELOPMENTAL BIOLOGY

Virtual Genome Walking across the 32 Gb Ambystoma mexicanum genome; assembling gene models and intronic sequence

(2018) Teri Evans et al.   Scientific Reports

The axolotl genome and the evolution of key tissue formation regulators

(2018) Sergej Nowoshilow et al.   NATURE

Miniscule differences between sex chromosomes in the giant genome of a salamander

(2018) Melissa C. Keinath et al.   Scientific Reports

Estimation of contemporary effective population size and population declines using RAD sequence data

(2017) Schyler O. Nunziata et al.   HEREDITY

Inferring the shallow phylogeny of true salamanders ( Salamandra ) by multiple phylogenomic approaches

(2017) Ariel Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines

(2017) Qin Cao et al.   NATURE GENETICS

Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum

(2017) M. Ryan Woodcock et al.   Scientific Reports

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

Exon capture optimization in amphibians with large genomes

(2016) Evan McCartney-Melstad et al.   Molecular Ecology Resources

Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin

(2016) Sean Whalen et al.   NATURE GENETICS

Rascaf: Improving Genome Assembly with RNA Sequencing Data

(2016) Li Song et al.   Plant Genome

AGOUTI: improving genome assembly and annotation using transcriptome data

(2016) Simo V. Zhang et al.   GigaScience

The history of the oldest self-sustaining laboratory animal: 150 years of axolotl research

(2015) Christian Reiß et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

ALLMAPS: robust scaffold ordering based on multiple maps

(2015) Haibao Tang et al.   GENOME BIOLOGY

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing

(2015) Melissa C. Keinath et al.   Scientific Reports

Acquisition of Germ Plasm Accelerates Vertebrate Evolution

(2014) T. Evans et al.   SCIENCE

Genomics of a Metamorphic Timing QTL: met1 Maps to a Unique Genomic Position and Regulates Morph and Species-Specific Patterns of Brain Transcription

(2013) Robert B. Page et al.   Genome Biology and Evolution

Fluorescent in situ Hybridization on Mitotic Chromosomes of Mosquitoes

(2012) Vladimir A. Timoshevskiy et al.   Jove-Journal of Visualized Experiments

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes

(2011) Stephen R. Voss et al.   GENOME RESEARCH

High-Resolution Mapping of Interstitial Telomeric Repeats in Syrian Hamster Metaphase Chromosomes

(2010) S. Demin et al.   CYTOGENETIC AND GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genic regions of a large salamander genome contain long introns and novel genes

(2009) Jeramiah J Smith et al.   BMC GENOMICS

Amphibian sex determination: segregation and linkage analysis using members of the tiger salamander species complex (Ambystoma mexicanum and A. t. tigrinum)

(2009) J J Smith et al.   HEREDITY

Targeted disruption of the cardiac troponin T gene causes sarcomere disassembly and defects in heartbeat within the early mouse embryo

(2008) Kiyomasa Nishii et al.   DEVELOPMENTAL BIOLOGY

The Role of Kisspeptins and GPR54 in the Neuroendocrine Regulation of Reproduction

(2007) Simina M. Popa et al.   Annual Review of Physiology