A Transcriptome for the Study of Early Processes of Retinal Regeneration in the Adult Newt, Cynops pyrrhogaster

The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration

(2014) Md. Rafiqul Islam et al.   Scientific Reports

A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens

(2013) Ilgar Abdullayev et al.   EXPERIMENTAL CELL RESEARCH

The retinal pigment epithelium: An important player of retinal disorders and regeneration

(2013) Chikafumi Chiba   EXPERIMENTAL EYE RESEARCH

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration

(2013) Mario Looso et al.   GENOME BIOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Phylogeny and historical demography of Cynops pyrrhogaster (Amphibia: Urodela): Taxonomic relationships and distributional changes associated with climatic oscillations

(2012) Atsushi Tominaga et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MEK–ERK signaling in adult newt retinal pigment epithelium cells is strengthened immediately after surgical induction of retinal regeneration

(2012) Aki Mizuno et al.   NEUROSCIENCE LETTERS

A Regulatory Loop Involving PAX6, MITF, and WNT Signaling Controls Retinal Pigment Epithelium Development

(2012) Kapil Bharti et al.   PLoS Genetics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Controlling gene loss of function in newts with emphasis on lens regeneration

(2011) Panagiotis A Tsonis et al.   Nature Protocols

Expressing exogenous genes in newts by transgenesis

(2011) Martin Miguel Casco-Robles et al.   Nature Protocols

MEK-ERK and heparin-susceptible signaling pathways are involved in cell-cycle entry of the wound edge retinal pigment epithelium cells in the adult newt

(2011) Taro Yoshikawa et al.   Pigment Cell & Melanoma Research

Regenerative capacity in newts is not altered by repeated regeneration and ageing

(2011) Goro Eguchi et al.   Nature Communications

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Expression of stem cell pluripotency factors during regeneration in newts

(2009) Nobuyasu Maki et al.   DEVELOPMENTAL DYNAMICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Musashi-1, an RNA-binding protein, is indispensable for survival of photoreceptors

(2008) Kanako Susaki et al.   EXPERIMENTAL EYE RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Immunohistochemical analysis of Musashi-1 expression during retinal regeneration of adult newt

(2008) Jun Kaneko et al.   NEUROSCIENCE LETTERS