Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens
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Title
Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens
Authors
Keywords
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Journal
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 85, Issue 21, Pages -
Publisher
American Society for Microbiology
Online
2019-08-21
DOI
10.1128/aem.01368-19
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Note: Only part of the references are listed.- Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences
- (2019) Leho Tedersoo et al. Environmental Microbiology Reports
- CarrierSeq: a sequence analysis workflow for low-input nanopore sequencing
- (2018) Angel Mojarro et al. BMC BIOINFORMATICS
- Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
- (2018) Maura Costello et al. BMC GENOMICS
- A Sequel to Sanger: amplicon sequencing that scales
- (2018) Paul D. N. Hebert et al. BMC GENOMICS
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
- (2018) Søren M Karst et al. NATURE BIOTECHNOLOGY
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Nanopore Sequencing as a Surveillance Tool for Plant Pathogens in Plant and Insect Tissues
- (2018) Aline Bronzato Badial et al. PLANT DISEASE
- Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
- (2018) Aaron Pomerantz et al. GigaScience
- Introducing ribosomal tandem repeat barcoding for fungi
- (2018) Christian Wurzbacher et al. Molecular Ecology Resources
- Structure and function of the global topsoil microbiome
- (2018) Mohammad Bahram et al. NATURE
- Paving the way to single-molecule protein sequencing
- (2018) Laura Restrepo-Pérez et al. Nature Nanotechnology
- Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
- (2018) Roger Volden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Surveying silicon nitride nanopores for glycomics and heparin quality assurance
- (2018) Buddini Iroshika Karawdeniya et al. Nature Communications
- Forensic tri-allelic SNP genotyping using nanopore sequencing
- (2018) Senne Cornelis et al. Forensic Science International-Genetics
- Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer
- (2018) Sae Ashikawa et al. JOURNAL OF MEDICAL MICROBIOLOGY
- High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations
- (2018) Leho Tedersoo et al. Molecular Ecology Resources
- Mycobiome diversity: high-throughput sequencing and identification of fungi
- (2018) R. Henrik Nilsson et al. NATURE REVIEWS MICROBIOLOGY
- Species and cell-type properties of classically defined human and rodent neurons and glia
- (2018) Xiao Xu et al. eLife
- NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
- (2018) Szymon T Calus et al. GigaScience
- Corrigendum for: “Oomycete-specific ITS primers for identification and metabarcoding” published in MycoKeys, doi: 10.3897/mycokeys.14.9244
- (2018) Taavi Riit et al. MycoKeys
- Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
- (2017) Julia Kyaschenko et al. ISME Journal
- Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
- (2017) Antonina A. Votintseva et al. JOURNAL OF CLINICAL MICROBIOLOGY
- PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data
- (2017) Sten Anslan et al. Molecular Ecology Resources
- Detecting DNA cytosine methylation using nanopore sequencing
- (2017) Jared T Simpson et al. NATURE METHODS
- PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
- (2017) Leho Tedersoo et al. NEW PHYTOLOGIST
- Community Profiling of Fusarium in Combination with Other Plant-Associated Fungi in Different Crop Species Using SMRT Sequencing
- (2017) Florian Walder et al. Frontiers in Plant Science
- Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer
- (2017) Alfonso Benítez-Páez et al. GigaScience
- Profiling bacterial communities by MinION sequencing of ribosomal operons
- (2017) Lee J. Kerkhof et al. Microbiome
- De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
- (2017) Francesca Giordano et al. Scientific Reports
- Nanopore DNA Sequencing and Genome Assembly on the International Space Station
- (2017) Sarah L. Castro-Wallace et al. Scientific Reports
- Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
- (2016) Josef Wagner et al. BMC MICROBIOLOGY
- Neotypification of Dothistroma septosporum and epitypification of D. pini, causal agents of Dothistroma needle blight of pine
- (2016) I. Barnes et al. FOREST PATHOLOGY
- High-resolution phylogenetic microbial community profiling
- (2016) Esther Singer et al. ISME Journal
- Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
- (2016) K. Schmidt et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Real-time, portable genome sequencing for Ebola surveillance
- (2016) Joshua Quick et al. NATURE
- Detection of plant pathogens using real-time PCR: how reliable are lateCtvalues?
- (2016) M. Grosdidier et al. PLANT PATHOLOGY
- Fungal identification biases in microbiome projects
- (2016) Leho Tedersoo et al. Environmental Microbiology Reports
- Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
- (2016) Jongoh Shin et al. Scientific Reports
- Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
- (2016) Patrick D. Schloss et al. PeerJ
- INC-Seq: accurate single molecule reads using nanopore sequencing
- (2016) Chenhao Li et al. GigaScience
- Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
- (2016) Alfonso Benítez-Páez et al. GigaScience
- Oomycete-specific ITS primers for identification and metabarcoding
- (2016) Taavi Riit et al. MycoKeys
- Oxford Nanopore MinION Sequencing and Genome Assembly
- (2016) Hengyun Lu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens
- (2015) Thierry Comtet et al. BIOLOGICAL INVASIONS
- Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects
- (2015) Tsugunori Notomi et al. JOURNAL OF MICROBIOLOGY
- High-Throughput Sequencing Technologies
- (2015) Jason A. Reuter et al. MOLECULAR CELL
- Initial colonization, community assembly and ecosystem function: fungal colonist traits and litter biochemistry mediate decay rate
- (2015) Lauren C. Cline et al. MOLECULAR ECOLOGY
- Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
- (2015) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
- (2015) Andy Kilianski et al. GigaScience
- PacBio Sequencing and Its Applications
- (2015) Anthony Rhoads et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Improved performance of the PacBio SMRT technology for 16S rDNA sequencing
- (2014) Jennifer J. Mosher et al. JOURNAL OF MICROBIOLOGICAL METHODS
- A first look at the Oxford Nanopore MinION sequencer
- (2014) Alexander S. Mikheyev et al. Molecular Ecology Resources
- A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
- (2014) Joshua Quick et al. GigaScience
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?
- (2013) Bruce E. Deagle et al. Molecular Ecology Resources
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
- (2013) Johan Bengtsson-Palme et al. Methods in Ecology and Evolution
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Rapid Detection of Phytophthora ramorum and P. kernoviae by Two-Minute DNA Extraction Followed by Isothermal Amplification and Amplicon Detection by Generic Lateral Flow Device
- (2010) J. A. Tomlinson et al. PHYTOPATHOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Development, Comparison, and Validation of Real-Time and Conventional PCR Tools for the Detection of the Fungal Pathogens Causing Brown Spot and Red Band Needle Blights of Pine
- (2009) Renaud Ioos et al. PHYTOPATHOLOGY
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
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