Himalayan Saccharomyces eubayanus Genome Sequences Reveal Genetic Markers Explaining Heterotic Maltotriose Consumption by Saccharomyces pastorianus Hybrids

Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions

(2019) Arthur R. Gorter de Vries et al.   Frontiers in Genetics

In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation

(2019) Nick Brouwers et al.   PLoS Genetics

Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function

(2019) EmilyClare P. Baker et al.   PLoS Genetics

Combined engineering of disaccharide transport and phosphorolysis for enhanced ATP yield from sucrose fermentation in Saccharomyces cerevisiae

(2018) Wesley Leoricy Marques et al.   METABOLIC ENGINEERING

Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth

(2018) Mareike Möller et al.   GENETICS

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T

(2018) Anja Brickwedde et al.   Frontiers in Microbiology

Targeted metagenomics approach to capture the biodiversity of Saccharomyces genus in wild environments

(2018) Haya F. Alsammar et al.   Environmental Microbiology Reports

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus

(2017) Arthur R. Gorter de Vries et al.   Microbial Cell Factories

Alternative Saccharomyces interspecies hybrid combinations and their potential for low-temperature wort fermentation

(2017) Jarkko Nikulin et al.   YEAST

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast

(2017) Anja Brickwedde et al.   Frontiers in Microbiology

Novel brewing yeast hybrids: creation and application

(2016) Kristoffer Krogerus et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

(2016) Brigida Gallone et al.   CELL

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization

(2016) Miki Okuno et al.   DNA RESEARCH

The regulatableMAL32promoter inSaccharomyces cerevisiae: characteristics and tools to facilitate its use

(2016) Matthias Meurer et al.   YEAST

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

(2016) David Peris et al.   PLoS Genetics

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

(2015) M. van den Broek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Large Set of Newly Created Interspecific Saccharomyces Hybrids Increases Aromatic Diversity in Lager Beers

(2015) Stijn Mertens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond

(2015) Marit Hebly et al.   FEMS YEAST RESEARCH

New lager yeast strains generated by interspecific hybridization

(2015) Kristoffer Krogerus et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

The Genome Sequence ofSaccharomyces eubayanusand the Domestication of Lager-Brewing Yeasts

(2015) EmilyClare Baker et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly

(2015) Michael E. Lee et al.   ACS Synthetic Biology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Evidence for a Far East Asian origin of lager beer yeast

(2014) Jian Bing et al.   CURRENT BIOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Genome Sequence of Saccharomyces carlsbergensis , the World’s First Pure Culture Lager Yeast

(2014) Andrea Walther et al.   G3-Genes Genomes Genetics

Functional analysis and transcriptional regulation of two orthologs ofARO10, encoding broad-substrate-specificity 2-oxo-acid decarboxylases, in the brewing yeastSaccharomyces pastorianusCBS1483

(2013) Irina Bolat et al.   FEMS YEAST RESEARCH

Self-processing of ribozyme-flanked RNAs into guide RNAsin vitroandin vivofor CRISPR-mediated genome editing

(2013) Yangbin Gao et al.   Journal of Integrative Plant Biology

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Comparative physiology and fermentation performance of Saaz and Frohberg lager yeast strains and the parental speciesSaccharomyces eubayanus

(2013) Brian R. Gibson et al.   YEAST

Effects of Wort Gravity and Nitrogen Level on Fermentation Performance of Brewer’s Yeast and the Formation of Flavor Volatiles

(2012) Hongjie Lei et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Rapid identification ofSaccharomyces eubayanusand its hybrids

(2012) Reuben J. Pengelly et al.   FEMS YEAST RESEARCH

amdSYM, a new dominant recyclable marker cassette forSaccharomyces cerevisiae

(2012) Daniel Solis-Escalante et al.   FEMS YEAST RESEARCH

Characterization of maltotriose transporters from theSaccharomyces eubayanussubgenome of the hybridSaccharomyces pastorianuslager brewing yeast strain Weihenstephan 34/70

(2012) F.E.M. Cousseau et al.   LETTERS IN APPLIED MICROBIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Increasing free-energy (ATP) conservation in maltose-grown Saccharomyces cerevisiae by expression of a heterologous maltose phosphorylase

(2011) Stefan de Kok et al.   METABOLIC ENGINEERING

Deciphering the Hybridisation History Leading to the Lager Lineage Based on the Mosaic Genomes of Saccharomyces bayanus Strains NBRC1948 and CBS380T

(2011) Huu-Vang Nguyen et al.   PLoS One

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast

(2011) Virve Vidgren et al.   YEAST

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts

(2010) Chris A. Brown et al.   CURRENT BIOLOGY

The temperature dependence of maltose transport in ale and lager strains of brewer's yeast

(2010) Virve Vidgren et al.   FEMS YEAST RESEARCH

Improved Fermentation Performance of a Lager Yeast after Repair of Its AGT1 Maltose and Maltotriose Transporter Genes

(2009) V. Vidgren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

(2009) Jonathan L. Gordon et al.   PLoS Genetics

Molecular Analysis of Maltotriose Active Transport and Fermentation by Saccharomyces cerevisiae Reveals a Determinant Role for the AGT1 Permease

(2008) S. L. Alves et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains

(2008) H. W. Wisselink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

(2008) B. Dunn et al.   GENOME RESEARCH

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

(2008) Carola Engler et al.   PLoS One