In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation

Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production

(2018) Robert Mans et al.   CURRENT OPINION IN BIOTECHNOLOGY

Diverse yeasts for diverse fermented beverages and foods

(2018) Chris Todd Hittinger et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbe Profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

(2018) José Paulo Sampaio   MICROBIOLOGY-SGM

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

(2018) Jackson Peter et al.   NATURE

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T

(2018) Anja Brickwedde et al.   Frontiers in Microbiology

Selection of Pof-Saccharomyces eubayanus Variants for the Construction of S. cerevisiae × S. eubayanus Hybrids With Reduced 4-Vinyl Guaiacol Formation

(2018) Jasper A. Diderich et al.   Frontiers in Microbiology

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus

(2017) Arthur R. Gorter de Vries et al.   Microbial Cell Factories

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast

(2017) Anja Brickwedde et al.   Frontiers in Microbiology

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

(2017) Benjamin Istace et al.   GigaScience

Proton-solute coupling mechanism of the maltose transporter from Saccharomyces cerevisiae

(2017) Ryan Henderson et al.   Scientific Reports

Novel brewing yeast hybrids: creation and application

(2016) Kristoffer Krogerus et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations

(2016) Daniel González-Ramos et al.   Biotechnology for Biofuels

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

(2016) Brigida Gallone et al.   CELL

A Conserved DNA Repeat Promotes Selection of a Diverse Repertoire of Trypanosoma brucei Surface Antigens from the Genomic Archive

(2016) Galadriel Hovel-Miner et al.   PLoS Genetics

Hxt13, Hxt15, Hxt16 and Hxt17 from Saccharomyces cerevisiae represent a novel type of polyol transporters

(2016) Paulina Jordan et al.   Scientific Reports

Structural Biology of the Major Facilitator Superfamily Transporters

(2015) Nieng Yan   Annual Review of Biophysics

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

(2015) M. van den Broek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Large Set of Newly Created Interspecific Saccharomyces Hybrids Increases Aromatic Diversity in Lager Beers

(2015) Stijn Mertens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary engineering to enhance starter culture performance in food fermentations

(2015) Herwig Bachmann et al.   CURRENT OPINION IN BIOTECHNOLOGY

Saccharomyces eubayanusandSaccharomyces arboricolareside in North Island native New Zealand forests

(2015) Velimir Gayevskiy et al.   ENVIRONMENTAL MICROBIOLOGY

S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond

(2015) Marit Hebly et al.   FEMS YEAST RESEARCH

The Genome Sequence ofSaccharomyces eubayanusand the Domestication of Lager-Brewing Yeasts

(2015) EmilyClare Baker et al.   MOLECULAR BIOLOGY AND EVOLUTION

The in vivo dynamics of antigenic variation in Trypanosoma brucei

(2015) M. R. Mugnier et al.   SCIENCE

Evidence for a Far East Asian origin of lager beer yeast

(2014) Jian Bing et al.   CURRENT BIOLOGY

A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes

(2014) Anders Bergström et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population structure and reticulate evolution ofSaccharomyces eubayanusand its lager-brewing hybrids

(2014) David Peris et al.   MOLECULAR ECOLOGY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae

(2014) Zehua Bao et al.   ACS Synthetic Biology

Gene Copy-Number Alterations: A Cost-Benefit Analysis

(2013) Yun-Chi Tang et al.   CELL

Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression

(2013) Barbara Dunn et al.   PLoS Genetics

Mosaic VSGs and the Scale of Trypanosoma brucei Antigenic Variation

(2013) James P. J. Hall et al.   PLoS Pathogens

De novo detection of copy number variation by co-assembly

(2012) Jurgen F. Nijkamp et al.   BIOINFORMATICS

Functional divergence of gene duplicates through ectopic recombination

(2012) Joaquin F Christiaens et al.   EMBO REPORTS

Rapid identification ofSaccharomyces eubayanusand its hybrids

(2012) Reuben J. Pengelly et al.   FEMS YEAST RESEARCH

amdSYM, a new dominant recyclable marker cassette forSaccharomyces cerevisiae

(2012) Daniel Solis-Escalante et al.   FEMS YEAST RESEARCH

Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments

(2012) B. Dunn et al.   GENOME RESEARCH

Characterization of the Saccharomyces bayanus-type AGT1 transporter of lager yeast

(2012) Virve Vidgren et al.   JOURNAL OF THE INSTITUTE OF BREWING

Characterization of maltotriose transporters from theSaccharomyces eubayanussubgenome of the hybridSaccharomyces pastorianuslager brewing yeast strain Weihenstephan 34/70

(2012) F.E.M. Cousseau et al.   LETTERS IN APPLIED MICROBIOLOGY

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species

(2012) A. P. Jackson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosomal duplication is a transient evolutionary solution to stress

(2012) A. H. Yona et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication

(2012) Karin Voordeckers et al.   PLOS BIOLOGY

Newly generated interspecific wine yeast hybrids introduce flavour and aroma diversity to wines

(2011) Jennifer R. Bellon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A multiplex set of species-specific primers for rapid identification of members of the genus Saccharomyces

(2011) Alastair Muir et al.   FEMS YEAST RESEARCH

Increasing free-energy (ATP) conservation in maltose-grown Saccharomyces cerevisiae by expression of a heterologous maltose phosphorylase

(2011) Stefan de Kok et al.   METABOLIC ENGINEERING

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Deciphering the Hybridisation History Leading to the Lager Lineage Based on the Mosaic Genomes of Saccharomyces bayanus Strains NBRC1948 and CBS380T

(2011) Huu-Vang Nguyen et al.   PLoS One

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

(2011) K.-K. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts

(2010) Chris A. Brown et al.   CURRENT BIOLOGY

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Characterization of a New Multigene Family Encoding Isomaltases in the YeastSaccharomyces cerevisiae, theIMAFamily

(2010) Marie-Ange Teste et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster

(2010) R. L. Rogers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Fermentation Performance of a Lager Yeast after Repair of Its AGT1 Maltose and Maltotriose Transporter Genes

(2009) V. Vidgren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

(2009) Theo A Knijnenburg et al.   BMC GENOMICS

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

EVOLUTION FROM FISH TO MAMMALS BY GENE DUPLICATION

(2009) SUSUMU OHNO et al.   HEREDITAS

A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei

(2009) Catharine E. Boothroyd et al.   NATURE

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

Adaptive Evolution of a Lactose-Consuming Saccharomyces cerevisiae Recombinant

(2008) P. M. R. Guimaraes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular Analysis of Maltotriose Active Transport and Fermentation by Saccharomyces cerevisiae Reveals a Determinant Role for the AGT1 Permease

(2008) S. L. Alves et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Thr505and Ser557residues of the AGT1-encoded α-glucoside transporter are critical for maltotriose transport in Saccharomyces cerevisiae

(2008) A. Smit et al.   JOURNAL OF APPLIED MICROBIOLOGY

Escape from adaptive conflict after duplication in an anthocyanin pathway gene

(2008) David L. Des Marais et al.   NATURE

The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

(2008) David Gresham et al.   PLoS Genetics