Revealing the Virulence Potential of Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing

In-host microevolution of Aspergillus fumigatus : A phenotypic and genotypic analysis

(2018) Eloise Ballard et al.   FUNGAL GENETICS AND BIOLOGY

Post-influenzal triazole-resistant aspergillosis following allogeneic stem cell transplantation

(2018) Alida Fe Talento et al.   MYCOSES

Linking secondary metabolites to gene clusters through genome sequencing of six diverseAspergillusspecies

(2018) Inge Kjærbølling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern

(2018) Rocio Garcia-Rubio et al.   Genes

Invasive aspergillosis in patients admitted to the intensive care unit with severe influenza: a retrospective cohort study

(2018) Alexander F A D Schauwvlieghe et al.   Lancet Respiratory Medicine

Cut-and-Paste Transposons in Fungi with Diverse Lifestyles

(2017) Anna Muszewska et al.   Genome Biology and Evolution

Aspergillus fumigatus morphology and dynamic host interactions

(2017) Frank L. van de Veerdonk et al.   NATURE REVIEWS MICROBIOLOGY

Heterogeneity Confounds Establishment of “a” Model Microbial Strain

(2017) Nancy P. Keller   mBio

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

(2017) Abigail L. Lind et al.   PLOS BIOLOGY

Modulation of Immune Signaling and Metabolism Highlights Host and Fungal Transcriptional Responses in Mouse Models of Invasive Pulmonary Aspergillosis

(2017) Shiv D. Kale et al.   Scientific Reports

In-host adaptation and acquired triazole resistance in Aspergillus fumigatus : a dilemma for clinical management

(2016) Paul E Verweij et al.   LANCET INFECTIOUS DISEASES

Secondary metabolite arsenal of an opportunistic pathogenic fungus

(2016) Elaine Bignell et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Clinical implications of globally emerging azole resistance inAspergillus fumigatus

(2016) Jacques F. Meis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Heterogeneity among Isolates Reveals that Fitness in Low Oxygen Correlates with Aspergillus fumigatus Virulence

(2016) Caitlin H. Kowalski et al.   mBio

Epidemiological and Genomic Landscape of Azole Resistance Mechanisms in Aspergillus Fungi

(2016) Daisuke Hagiwara et al.   Frontiers in Microbiology

Characterization of Aspergillus fumigatus Isolates from Air and Surfaces of the International Space Station

(2016) Benjamin P. Knox et al.   mSphere

Invasive Aspergillosis Associated With Severe Influenza Infections

(2016) Nancy F. Crum-Cianflone   Open Forum Infectious Diseases

A New Aspergillus fumigatus Typing Method Based on Hypervariable Tandem Repeats Located within Exons of Surface Protein Coding Genes (TRESP)

(2016) Rocio Garcia-Rubio et al.   PLoS One

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

(2015) Alireza Abdolrasouli et al.   mBio

Whole-Genome Comparison of Aspergillus fumigatus Strains Serially Isolated from Patients with Aspergillosis

(2014) D. Hagiwara et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genetic and virulence variation in an environmental population of the opportunistic pathogen Aspergillus fumigatus

(2014) F. Alshareef et al.   MICROBIOLOGY-SGM

Isolate-Dependent Growth, Virulence, and Cell Wall Composition in the Human Pathogen Aspergillus fumigatus

(2014) Nansalmaa Amarsaikhan et al.   PLoS One

Depletion of Alveolar Macrophages during Influenza Infection Facilitates Bacterial Superinfections

(2013) H. E. Ghoneim et al.   JOURNAL OF IMMUNOLOGY

Strain Dependent Variation of Immune Responses to A. fumigatus: Definition of Pathogenic Species

(2013) Lisa Rizzetto et al.   PLoS One

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Rapid Induction of Multiple Resistance Mechanisms in Aspergillus fumigatus during Azole Therapy: a Case Study and Review of the Literature

(2011) Simone M. T. Camps et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Targeted Disruption of Nonribosomal Peptide Synthetasepes3Augments the Virulence of Aspergillus fumigatus

(2011) Karen A. O'Hanlon et al.   INFECTION AND IMMUNITY

Cytokine Response Patterns in Severe Pandemic 2009 H1N1 and Seasonal Influenza among Hospitalized Adults

(2011) Nelson Lee et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Aspergillus fumigatus: contours of an opportunistic human pathogen

(2010) Allison McCormick et al.   CELLULAR MICROBIOLOGY

What makes Aspergillus fumigatus a successful pathogen? Genes and molecules involved in invasive aspergillosis

(2010) Ana Abad et al.   REVISTA IBEROAMERICANA DE MICOLOGIA

Possible Environmental Origin of Resistance of Aspergillus fumigatus to Medical Triazoles

(2009) E. Snelders et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Comparison of multiple typing methods for Aspergillus fumigatus

(2009) L.M.E. Vanhee et al.   CLINICAL MICROBIOLOGY AND INFECTION

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Conidiation Color Mutants of Aspergillus fumigatus Are Highly Pathogenic to the Heterologous Insect Host Galleria mellonella

(2009) Jennifer C. Jackson et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Aspergillus fumigatus: virulence genes in a street-smart mold

(2008) David S Askew   CURRENT OPINION IN MICROBIOLOGY

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics