Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern

Insight into the Significance of Aspergillus fumigatus cyp51A Polymorphisms

(2018) Rocio Garcia-Rubio et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Elevated MIC Values of Imidazole Drugs against Aspergillus fumigatus Isolates with TR 34 /L98H/S297T/F495I Mutation

(2018) Yong Chen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prevalence, mechanisms and genetic relatedness of the human pathogenic fungus Aspergillus fumigatus exhibiting resistance to medical azoles in the environment of Taiwan

(2017) Hsuan-Chen Wang et al.   ENVIRONMENTAL MICROBIOLOGY

The novel Aspergillus fumigatus MAT1-2 - 4 mating-type gene is required for mating and cleistothecia formation

(2017) Yidong Yu et al.   FUNGAL GENETICS AND BIOLOGY

Heterogeneity Confounds Establishment of “a” Model Microbial Strain

(2017) Nancy P. Keller   mBio

Whole Genome Sequencing—Implications for Infection Prevention and Outbreak Investigations

(2017) Kyle J. Popovich et al.   Current Infectious Disease Reports

Global Population Genetic Analysis of Aspergillus fumigatus

(2017) Eta Ebasi Ashu et al.   mSphere

Screening and Characterization of a Non- cyp51A Mutation in an Aspergillus fumigatus cox10 Strain Conferring Azole Resistance

(2016) Xiaolei Wei et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and origins of Indian multi-triazole resistant strains ofAspergillus fumigatus

(2016) Howard Chang et al.   MYCOSES

Heterogeneity among Isolates Reveals that Fitness in Low Oxygen Correlates with Aspergillus fumigatus Virulence

(2016) Caitlin H. Kowalski et al.   mBio

Aspergillus fumigatus Photobiology Illuminates the Marked Heterogeneity between Isolates

(2016) Kevin K. Fuller et al.   mBio

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Azole Resistance inAspergillus fumigatus: Can We Retain the Clinical Use of Mold-Active Antifungal Azoles?

(2015) Paul E. Verweij et al.   CLINICAL INFECTIOUS DISEASES

Genome sequence comparison of Aspergillus fumigatus strains isolated from patients with pulmonary aspergilloma and chronic necrotizing pulmonary aspergillosis

(2015) Azusa Takahashi-Nakaguchi et al.   MEDICAL MYCOLOGY

Whole genome sequencing in clinical and public health microbiology

(2015) J.C. Kwong et al.   PATHOLOGY

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

(2015) Alireza Abdolrasouli et al.   mBio

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

(2015) Liliana Losada et al.   PLoS Pathogens

Multiple mechanisms contribute to the development of clinically significant azole resistance in Aspergillus fumigatus

(2015) W. S. Moye-Rowley   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Exploring azole antifungal drug resistance in Aspergillus fumigatus with special reference to resistance mechanisms

(2014) Anuradha Chowdhary et al.   Future Microbiology

Whole-Genome Comparison of Aspergillus fumigatus Strains Serially Isolated from Patients with Aspergillosis

(2014) D. Hagiwara et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Health care: Bring microbial sequencing to hospitals

(2014) Sharon Peacock   NATURE

The clinical spectrum of pulmonary aspergillosis

(2014) C. Kosmidis et al.   THORAX

Whole-genome sequencing to control antimicrobial resistance

(2014) Claudio U. Köser et al.   TRENDS IN GENETICS

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

The cdr1B efflux transporter is associated with non-cyp51a-mediated itraconazole resistance in Aspergillus fumigatus 

(2013) Marcin G. Fraczek et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Strain Dependent Variation of Immune Responses to A. fumigatus: Definition of Pathogenic Species

(2013) Lisa Rizzetto et al.   PLoS One

Molecular Epidemiology of Aspergillus fumigatus Isolates Harboring the TR34/L98H Azole Resistance Mechanism

(2012) S. M. T. Camps et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Clonal Expansion and Emergence of Environmental Multiple-Triazole-Resistant Aspergillus fumigatus Strains Carrying the TR34/L98H Mutations in the cyp51A Gene in India

(2012) Anuradha Chowdhary et al.   PLoS One

High Prevalence of Azole-Resistant Aspergillus fumigatus in Adults with Cystic Fibrosis Exposed to Itraconazole

(2011) Pierre-Régis Burgel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Prospective Surveillance for Invasive Fungal Infections in Hematopoietic Stem Cell Transplant Recipients, 2001–2006: Overview of the Transplant‐Associated Infection Surveillance Network (TRANSNET) Database

(2010) Dimitrios P. Kontoyiannis et al.   CLINICAL INFECTIOUS DISEASES

Invasive Fungal Infections among Organ Transplant Recipients: Results of the Transplant‐Associated Infection Surveillance Network (TRANSNET)

(2010) Peter G. Pappas et al.   CLINICAL INFECTIOUS DISEASES

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Acquired resistance to voriconazole and itraconazole in a patient with pulmonary aspergilloma

(2010) Bahrie Bellete et al.   MEDICAL MYCOLOGY

Possible Environmental Origin of Resistance of Aspergillus fumigatus to Medical Triazoles

(2009) E. Snelders et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Aspergillus Section Fumigati: Antifungal Susceptibility Patterns and Sequence-Based Identification

(2008) L. Alcazar-Fuoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Multiple-azole-resistantAspergillus fumigatusosteomyelitis in a patient with chronic granulomatous disease successfully treated with long-term oral posaconazole and surgery

(2008) Caspar J. Hodiamont et al.   MEDICAL MYCOLOGY

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics