Whole-Genome Comparison of Aspergillus fumigatus Strains Serially Isolated from Patients with Aspergillosis

Antifungal susceptibility of Aspergillus fumigatus clinical isolates collected from various areas in Japan

(2014) Kazuyo Kikuchi et al.   JOURNAL OF INFECTION AND CHEMOTHERAPY

Azole resistance in Aspergillus fumigatus

(2013) Edith Vermeulen et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Azole resistant Aspergillus fumigatus: An emerging problem

(2013) L. Lelièvre et al.   MEDECINE ET MALADIES INFECTIEUSES

Major variations inAspergillus fumigatusarising within aspergillomas in chronic pulmonary aspergillosis

(2013) S. J. Howard et al.   MYCOSES

TheAspergillusGenome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

(2013) Gustavo C. Cerqueira et al.   NUCLEIC ACIDS RESEARCH

NikA/TcsC Histidine Kinase Is Involved in Conidiation, Hyphal Morphology, and Responses to Osmotic Stress and Antifungal Chemicals in Aspergillus fumigatus

(2013) Daisuke Hagiwara et al.   PLoS One

Within-Host Evolution of Burkholderia pseudomallei over a Twelve-Year Chronic Carriage Infection

(2013) E. P. Price et al.   mBio

Comparative Genomics of Serial Isolates of Cryptococcus neoformans Reveals Gene Associated With Carbon Utilization and Virulence

(2013) Kate L. Ormerod et al.   G3-Genes Genomes Genetics

Correlation between Triazole Treatment History and Susceptibility in Clinically Isolated Aspergillus fumigatus

(2012) Masato Tashiro et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

In vitro–in vivo correlation of voriconazole resistance due to G448S mutation (cyp51A gene) in Aspergillus fumigatus

(2012) S. Krishnan Natesan et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Characterization of thevelvetregulators inAspergillus fumigatus

(2012) Hee-Soo Park et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Discovery of a hapE Mutation That Causes Azole Resistance in Aspergillus fumigatus through Whole Genome Sequencing and Sexual Crossing

(2012) Simone M. T. Camps et al.   PLoS One

Rapid Induction of Multiple Resistance Mechanisms in Aspergillus fumigatus during Azole Therapy: a Case Study and Review of the Literature

(2011) Simone M. T. Camps et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

(2011) Nina Cramer et al.   ENVIRONMENTAL MICROBIOLOGY

Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy

(2011) Michael Hornsey et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

(2011) M. B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity

(2011) John D. Gillece et al.   PLoS One

Acquired antifungal drug resistance inAspergillus fumigatus:epidemiology and detection

(2010) Susan Julie Howard et al.   MEDICAL MYCOLOGY

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

(2009) Kathryn E. Holt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

MLST versus microsatellites for typingAspergillus fumigatusisolates

(2009) C. H. W. Klaassen   MEDICAL MYCOLOGY

Treatment of Aspergillosis: Clinical Practice Guidelines of the Infectious Diseases Society of America

(2008) Thomas J. Walsh et al.   CLINICAL INFECTIOUS DISEASES

Revised Definitions of Invasive Fungal Disease from the European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) Consensus Group

(2008) Ben De Pauw et al.   CLINICAL INFECTIOUS DISEASES

Afyap1, encoding a bZip transcriptional factor ofAspergillus fumigatus, contributes to oxidative stress response but is not essential to the virulence of this pathogen in mice immunosuppressed by cyclophosphamide and triamcinolone

(2008) Jianjun Qiao et al.   MEDICAL MYCOLOGY

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics