Perspectives on Cultivation Strategies of Archaea

Expanding anaerobic alkane metabolism in the domain of Archaea

(2019) Yinzhao Wang et al.   Nature Microbiology

Two or three domains: a new view of tree of life in the genomics era

(2018) Zhichao Zhou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Specific enrichment of hyperthermophilic electroactive Archaea from deep-sea hydrothermal vent on electrically conductive support

(2018) Guillaume Pillot et al.   BIORESOURCE TECHNOLOGY

Iron Redox Transformation by the Thermo-Acidophilic Archaea from the Genus Sulfolobus

(2018) Yusei Masaki et al.   GEOMICROBIOLOGY JOURNAL

Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota

(2018) Yang Liu et al.   ISME Journal

Extreme halophilic archaea derive from two distinct methanogen Class II lineages

(2018) Monique Aouad et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Growth of sedimentaryBathyarchaeotaon lignin as an energy source

(2018) Tiantian Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and distribution of Archaea in global estuarine ecosystems

(2018) Xiaobo Liu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Asgard archaea are the closest prokaryotic relatives of eukaryotes

(2018) Anja Spang et al.   PLoS Genetics

Asgard archaea do not close the debate about the universal tree of life topology

(2018) Violette Da Cunha et al.   PLoS Genetics

Metagenomic Analysis of a Biphenyl-Degrading Soil Bacterial Consortium Reveals the Metabolic Roles of Specific Populations

(2018) Daniel Garrido-Sanz et al.   Frontiers in Microbiology

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

(2018) Xiaobo Liu et al.   Microbiome

Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats

(2018) Zackary J. Jay et al.   Nature Microbiology

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

(2018) Alexander J. Probst et al.   Nature Microbiology

Revival of Archaeal Methane Microbiology

(2018) Cornelia U. Welte   mSystems

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

(2018) Cindy J. Castelle et al.   NATURE REVIEWS MICROBIOLOGY

Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes

(2018) Karen G. Lloyd et al.   mSystems

Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench

(2018) Xinxu Zhang et al.   Frontiers in Microbiology

Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome

(2017) Guillaume Borrel et al.   ISME Journal

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

(2017) Panagiotis S Adam et al.   ISME Journal

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

(2017) C S Lazar et al.   ISME Journal

New insights into marine group III Euryarchaeota, from dark to light

(2017) Jose M Haro-Moreno et al.   ISME Journal

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota

(2017) Lin-Xing Chen et al.   ISME Journal

Asgard archaea illuminate the origin of eukaryotic cellular complexity

(2017) Katarzyna Zaremba-Niedzwiedzka et al.   NATURE

Reshaping the tree of life

(2017) Eva Heinz et al.   NATURE REVIEWS MICROBIOLOGY

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

(2017) Anja Spang et al.   SCIENCE

Single-cell genomics reveals pyrrolysine-encoding potential in members of uncultivated archaeal candidate division MSBL1

(2017) Yue Guan et al.   Environmental Microbiology Reports

Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes

(2017) Violette Da Cunha et al.   PLoS Genetics

Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles

(2017) Zhiliang Yu et al.   Frontiers in Microbiology

290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology

(2017) Benjamin J. Tully et al.   PeerJ

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

(2017) Sean P. Jungbluth et al.   Scientific Data

Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

(2017) Dimitry Y. Sorokin et al.   Nature Microbiology

Simultaneous enrichment of denitrifying anaerobic methane-oxidizing microorganisms and anammox bacteria in a hollow-fiber membrane biofilm reactor

(2016) Zhao-Wei Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enhancement of anaerobic methanogenesis at a short hydraulic retention time via bioelectrochemical enrichment of hydrogenotrophic methanogens

(2016) Yang Li et al.   BIORESOURCE TECHNOLOGY

Stimulation of methanogenesis in anaerobic digesters treating leachate from a municipal solid waste incineration plant with carbon cloth

(2016) Yuqing Lei et al.   BIORESOURCE TECHNOLOGY

Enrichment of specific electro-active microorganisms and enhancement of methane production by adding granular activated carbon in anaerobic reactors

(2016) Jung-Yeol Lee et al.   BIORESOURCE TECHNOLOGY

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

(2016) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

(2016) Kiley W Seitz et al.   ISME Journal

Modeling of soil nitrification responses to temperature reveals thermodynamic differences between ammonia-oxidizing activity of archaea and bacteria

(2016) Anne E Taylor et al.   ISME Journal

Happy together: microbial communities that hook up to swap electrons

(2016) Derek R Lovley   ISME Journal

Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks

(2016) Christen M. Klinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thermophilic archaea activate butane via alkyl-coenzyme M formation

(2016) Rafael Laso-Pérez et al.   NATURE

Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction

(2016) S. Scheller et al.   SCIENCE

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales

(2016) Jordan T. Bird et al.   Frontiers in Microbiology

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

(2016) Charlotte D. Vavourakis et al.   Frontiers in Microbiology

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

(2016) Brett J. Baker et al.   Nature Microbiology

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

(2016) Y. He et al.   Nature Microbiology

Lokiarchaeon is hydrogen dependent

(2016) Filipa L. Sousa et al.   Nature Microbiology

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

Rethinking Sediment Biogeochemistry After the Discovery of Electric Currents

(2015) Lars Peter Nielsen et al.   Annual Review of Marine Science

Enhancing syntrophic metabolism in up-flow anaerobic sludge blanket reactors with conductive carbon materials

(2015) Zhiqiang Zhao et al.   BIORESOURCE TECHNOLOGY

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Uncultivated thermophiles: current status and spotlight on ‘Aigarchaeota’

(2015) Brian P Hedlund et al.   CURRENT OPINION IN MICROBIOLOGY

Single cell activity reveals direct electron transfer in methanotrophic consortia

(2015) Shawn E. McGlynn et al.   NATURE

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

Eukaryotic origins

(2015) James A. Lake   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

(2015) Meng Li et al.   Nature Communications

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea

(2015) Arslan Arshad et al.   Frontiers in Microbiology

Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea

(2015) Carlo Berg et al.   Frontiers in Microbiology

Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri

(2014) Amelia-Elena Rotaru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Direct interspecies electron transfer accelerates syntrophic oxidation of butyrate in paddy soil enrichments

(2014) Huijuan Li et al.   ENVIRONMENTAL MICROBIOLOGY

Magnetite Particles Triggering a Faster and More Robust Syntrophic Pathway of Methanogenic Propionate Degradation

(2014) Carolina Cruz Viggi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Global Phylogenomic Analysis Disentangles the Complex Evolutionary History of DNA Replication in Archaea

(2014) Kasie Raymann et al.   Genome Biology and Evolution

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

(2014) Céline Petitjean et al.   Genome Biology and Evolution

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’

(2014) Noha H Youssef et al.   ISME Journal

‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

(2014) Lionel Guy et al.   ISME Journal

A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum

(2014) Ana-Belen Martin-Cuadrado et al.   ISME Journal

The development and application of high throughput cultivation technology in bioprocess development

(2014) Quan Long et al.   JOURNAL OF BIOTECHNOLOGY

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

(2014) Alexander J. Probst et al.   Nature Communications

Promoting Interspecies Electron Transfer with Biochar

(2014) Shanshan Chen et al.   Scientific Reports

Electric potential microelectrode for studies of electrobiogeophysics

(2014) Lars Riis Damgaard et al.   Journal of Geophysical Research-Biogeosciences

Biofilm development during the start-up period of anaerobic biofilm reactors: the biofilmArchaeacommunity is highly dependent on the support material

(2014) Frédéric Habouzit et al.   Microbial Biotechnology

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Archaeal biofilms: widespread and complex

(2013) Sabrina Fröls   BIOCHEMICAL SOCIETY TRANSACTIONS

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

(2013) Mircea Podar et al.   Biology Direct

Nitrogen Removal from Wastewater by Coupling Anammox and Methane-Dependent Denitrification in a Membrane Biofilm Reactor

(2013) Ying Shi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park

(2013) Jacob P Beam et al.   ISME Journal

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Archaea on Human Skin

(2013) Alexander J. Probst et al.   PLoS One

Archaeal origin of tubulin

(2012) Natalya Yutin et al.   Biology Direct

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

(2012) Mark A Kozubal et al.   ISME Journal

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

(2012) Alan M. Durbin et al.   Frontiers in Microbiology

Microbial Iron Cycling in Acidic Geothermal Springs of Yellowstone National Park: Integrating Molecular Surveys, Geochemical Processes, and Isolation of Novel Fe-Active Microorganisms

(2012) Mark A. Kozubal et al.   Frontiers in Microbiology

Archaeal diversity revealed in Antarctic sea ice

(2011) Rebecca O.M. Cowie et al.   ANTARCTIC SCIENCE

A new microfluidic concept for parallel operated milliliter-scale stirred tank bioreactors

(2011) Gabi Gebhardt et al.   BIOTECHNOLOGY PROGRESS

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor

(2011) Hiroyuki Imachi et al.   ISME Journal

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The archaeal ‘TACK’ superphylum and the origin of eukaryotes

(2011) Lionel Guy et al.   TRENDS IN MICROBIOLOGY

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria

(2010) B.-J. Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evidence for Different Contributions of Archaea and Bacteria to the Ammonia-Oxidizing Potential of Diverse Oregon Soils

(2010) A. E. Taylor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species

(2010) D. Nichols et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth and recombinant protein expression with Escherichia coli in different batch cultivation media

(2010) Ralf Hortsch et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor

(2010) Yu Zhang et al.   BIORESOURCE TECHNOLOGY

First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat

(2010) Félix Muller et al.   ENVIRONMENTAL MICROBIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Understanding biogeobatteries: Where geophysics meets microbiology

(2010) A. Revil et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Autotrophic carbon fixation in archaea

(2010) Ivan A. Berg et al.   NATURE REVIEWS MICROBIOLOGY

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

(2010) Takuro Nunoura et al.   NUCLEIC ACIDS RESEARCH

Enigmatic, ultrasmall, uncultivated Archaea

(2010) B. J. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enrichment of anaerobic methanotrophs in sulfate-reducing membrane bioreactors

(2009) Roel J.W. Meulepas et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group

(2009) Anke Meyerdierks et al.   ENVIRONMENTAL MICROBIOLOGY

Cultivating the uncultured: limits, advances and future challenges

(2009) Karine Alain et al.   EXTREMOPHILES

Geoglobus acetivorans sp. nov., an iron(III)-reducing archaeon from a deep-sea hydrothermal vent

(2009) G. B. Slobodkina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mapping the Tree of Life: Progress and Prospects

(2009) N. R. Pace   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Metagenomics reveals our incomplete knowledge of global diversity

(2008) M. Pignatelli et al.   BIOINFORMATICS

Fully automated single-use stirred-tank bioreactors for parallel microbial cultivations

(2008) Andreas Kusterer et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Micro-bioreactors for fed-batch fermentations with integrated online monitoring and microfluidic devices

(2008) A. Buchenauer et al.   BIOSENSORS & BIOELECTRONICS

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol

(2008) José R. de la Torre et al.   ENVIRONMENTAL MICROBIOLOGY

Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean

(2008) K. Mori et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon

(2008) Luis R Comolli et al.   ISME Journal

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

Microbial diversity and the genetic nature of microbial species

(2008) Mark Achtman et al.   NATURE REVIEWS MICROBIOLOGY

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A korarchaeal genome reveals insights into the evolution of the Archaea

(2008) J. G. Elkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA