Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi

(2015) Ana-Belen Martin-Cuadrado et al.   BMC GENOMICS

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Functional microbiology of soda lakes

(2015) Dimitry Y Sorokin et al.   CURRENT OPINION IN MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

(2015) Karen Andrade et al.   ISME Journal

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

(2015) Dimitry Y Sorokin et al.   ISME Journal

Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics

(2015) Tomàs Llorens-Marès et al.   ISME Journal

Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond

(2015) Addis Simachew et al.   MICROBIAL ECOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Carbon monoxide as a metabolic energy source for extremely halophilic microbes: Implications for microbial activity in Mars regolith

(2015) Gary M. King   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates

(2015) Dimitry Y. Sorokin et al.   Frontiers in Microbiology

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

From Metagenomics to Pure Culture: Isolation and Characterization of the Moderately Halophilic Bacterium Spiribacter salinus gen. nov., sp. nov.

(2014) María José León et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial diversity and biogeochemical cycling in soda lakes

(2014) Dimitry Y. Sorokin et al.   EXTREMOPHILES

Taxonomy of halophilic Archaea: current status and future challenges

(2014) Aharon Oren   EXTREMOPHILES

Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics

(2014) Ana B. Fernández et al.   FEMS MICROBIOLOGY ECOLOGY

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

(2014) Céline Petitjean et al.   Genome Biology and Evolution

Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.

(2014) R. S. Gupta et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenetic diversity of bacteria in soda lake stratified sediments

(2014) T. P. Tourova et al.   MICROBIOLOGY

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Unveiling viral–host interactions within the ‘microbial dark matter’

(2014) Manuel Martínez-García et al.   Nature Communications

Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach

(2014) Ana B. Fernández et al.   Frontiers in Microbiology

Genomes of “Spiribacter”, a streamlined, successful halophilic bacterium

(2013) Mario López-Pérez et al.   BMC GENOMICS

Genomic Makeup of the Marine Flavobacterium Nonlabens (Donghaeana) dokdonensis and Identification of a Novel Class of Rhodopsins

(2013) Soon-Kyeong Kwon et al.   Genome Biology and Evolution

Gracilimonas mengyeensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-western China

(2013) Y.-X. Wang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas

(2013) Y. Cho et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales

(2013) Noha H Youssef et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Surprising Prokaryotic and Eukaryotic Diversity, Community Structure and Biogeography of Ethiopian Soda Lakes

(2013) Anders Lanzén et al.   PLoS One

Genomes from Metagenomics

(2013) I. Sharon et al.   SCIENCE

A light-driven sodium ion pump in marine bacteria

(2013) Keiichi Inoue et al.   Nature Communications

Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico

(2013) Jesse G. Dillon et al.   Frontiers in Microbiology

Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes

(2013) Aharon Oren   Frontiers in Microbiology

Biodegradation Potential of Halo(alkali)philic Prokaryotes

(2012) Dimitry Y. Sorokin et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Bacterial Community Structure in a Semi-Arid Haloalkaline Soil Using Culture Independent Method

(2012) Jitendra Keshri et al.   GEOMICROBIOLOGY JOURNAL

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria

(2011) Juan A Ugalde et al.   Biology Direct

Diversity of extremophilic purple phototrophic bacteria in Soap Lake, a Central Washington (USA) Soda Lake

(2011) Marie Asao et al.   ENVIRONMENTAL MICROBIOLOGY

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

Application of ribulose-1,5-bisphosphate carboxylase/oxygenase genes as molecular markers for assessment of the diversity of autotrophic microbial communities inhabiting the upper sediment horizons of the saline and soda lakes of the Kulunda Steppe

(2011) T. P. Tourova et al.   MICROBIOLOGY

Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes

(2011) Luka Ausec et al.   PLoS One

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Bacterial Diversity in the Haloalkaline Lake Elmenteita, Kenya

(2010) R. Mwirichia et al.   CURRENT MICROBIOLOGY

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade

(2010) Michael Cunliffe   ISME Journal

Communities of anoxygenic phototrophic bacteria in the saline soda lakes of the Kulunda steppe (Altai Krai)

(2010) E. I. Kompantseva et al.   MICROBIOLOGY

Fructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme

(2010) Rafael F. Say et al.   NATURE

CO Dehydrogenase Genes Found in Metagenomic Fosmid Clones from the Deep Mediterranean Sea

(2009) A.-B. Martin-Cuadrado et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Biogeography of Six Salt Lakes in Inner Mongolia, China, and a Salt Lake in Argentina

(2009) E. Pagaling et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of ribosomal RNA genes in metagenomic fragments

(2009) Ying Huang et al.   BIOINFORMATICS

Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes

(2009) N. Vaisman et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gracilimonas tropica gen. nov., sp. nov., isolated from a Synechococcus culture

(2009) D. H. Choi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Psychroflexus salinarum sp. nov., isolated from a marine solar saltern

(2009) J.-H. Yoon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spatial and Temporal Patterns in the Microbial Diversity of a Meromictic Soda Lake in Washington State

(2008) P. A. Dimitriu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thenosgene cluster from gram-positive bacteriumGeobacillus thermodenitrificansNG80-2 and functional characterization of the recombinant NosZ

(2008) Xueqian Liu et al.   FEMS MICROBIOLOGY LETTERS

Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia)

(2008) E. N. Boldareva et al.   MICROBIOLOGY

Molecular mechanism of energy conservation in polysulfide respiration

(2008) Mika Jormakka et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY