Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea
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Title
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea
Authors
Keywords
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Journal
Nature Communications
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-11-17
DOI
10.1038/ncomms9933
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Note: Only part of the references are listed.- Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter
- (2015) William D Orsi et al. ISME Journal
- Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents
- (2015) Daniel C Reed et al. ISME Journal
- Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean
- (2015) Alyson E. Santoro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A large volume particulate and water multi-sampler with in situ preservation for microbial and biogeochemical studies
- (2014) J.A. Breier et al. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS
- Pangenome Evidence for Extensive Interdomain Horizontal Transfer Affecting Lineage Core and Shell Genes in Uncultured Planktonic Thaumarchaeota and Euryarchaeota
- (2014) Philippe Deschamps et al. Genome Biology and Evolution
- A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum
- (2014) Ana-Belen Martin-Cuadrado et al. ISME Journal
- Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin
- (2014) Cody S Sheik et al. ISME Journal
- Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation
- (2014) C. Brasen et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Hidden cycle of dissolved organic carbon in the deep ocean
- (2014) Christopher L. Follett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation
- (2014) W. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean
- (2014) Sara A. Lincoln et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
- (2014) K. Anantharaman et al. SCIENCE
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Microbial control of the dark end of the biological pump
- (2013) Gerhard J. Herndl et al. Nature Geoscience
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
- (2013) Neil D. Rawlings et al. NUCLEIC ACIDS RESEARCH
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs
- (2012) Ryan A Lesniewski et al. ISME Journal
- Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
- (2012) Brett J Baker et al. ISME Journal
- Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria
- (2012) K. Anantharaman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
- (2012) V. Iverson et al. SCIENCE
- Marine Microbes See a Sea of Gradients
- (2012) R. Stocker SCIENCE
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- Microbial oceanography of the dark ocean's pelagic realm
- (2011) Javier Arístegui et al. LIMNOLOGY AND OCEANOGRAPHY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume
- (2010) Gregory J. Dick et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
- (2010) Nianzhi Jiao et al. NATURE REVIEWS MICROBIOLOGY
- Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
- (2010) J. McCarren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enigmatic, ultrasmall, uncultivated Archaea
- (2010) B. J. Baker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
- (2010) C. B. Walker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- A suspended-particle rosette multi-sampler for discrete biogeochemical sampling in low-particle-density waters
- (2009) J.A. Breier et al. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS
- Abundances of crenarchaealamoAgenes and transcripts in the Pacific Ocean
- (2009) Matthew J. Church et al. ENVIRONMENTAL MICROBIOLOGY
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
- (2008) José R. de la Torre et al. ENVIRONMENTAL MICROBIOLOGY
- Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
- (2008) Ana-Belen Martin-Cuadrado et al. ISME Journal
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- Prediction of signal peptides in archaea
- (2008) P.G. Bagos et al. PROTEIN ENGINEERING DESIGN & SELECTION
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