Genome-wide association analysis of nutrient traits in the oyster Crassostrea gigas: genetic effect and interaction network

Association and Functional Analyses Revealed That PPP1R3B Plays an Important Role in the Regulation of Glycogen Content in the Pacific Oyster Crassostrea gigas

(2019) Sheng Liu et al.   Frontiers in Genetics

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Near infra-red spectroscopy quantitative modelling of bivalve protein, lipid and glycogen composition using single-species versus multi-species calibration and validation sets

(2018) Jill K. Bartlett et al.   SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

Genomic Selection for Growth Traits in Pacific Oyster (Crassostrea gigas): Potential of Low-Density Marker Panels for Breeding Value Prediction

(2018) Alejandro P. Gutierrez et al.   Frontiers in Genetics

Divergence and plasticity shape adaptive potential of the Pacific oyster

(2018) Li Li et al.   Nature Ecology & Evolution

A Genome-Wide Association Study Identifies the Genomic Region Associated with Shell Color in Yesso Scallop, Patinopecten yessoensis

(2017) Liang Zhao et al.   MARINE BIOTECHNOLOGY

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Genome-wide analysis of structural variants reveals genetic differences in Chinese pigs

(2017) Ruifei Yang et al.   PLoS One

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

(2017) Yuli Li et al.   Nature Communications

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Coverage recommendation for genotyping analysis of highly heterologous species using next-generation sequencing technology

(2016) Kai Song et al.   Scientific Reports

Mapping quantitative trait loci for flesh fat content in common carp (Cyprinus carpio)

(2015) Youyi Kuang et al.   AQUACULTURE

A meta analysis of genome-wide association studies for limb bone lengths in four pig populations

(2015) Yuanmei Guo et al.   BMC GENETICS

Fatty acid, amino acid, and mineral composition of four common vetch seeds on Qinghai-Tibetan plateau

(2015) Zhuxin Mao et al.   FOOD CHEMISTRY

Development of Calibration Models for Rapid Determination of Chemical Composition of Pacific Oyster (Crassostrea gigas) by Near Infrared Reflectance Spectroscopy

(2015) Weijun Wang et al.   JOURNAL OF SHELLFISH RESEARCH

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Seasonal variation in reproductive activity and biochemical composition of flat oyster (Ostrea edulis) in the Homa Lagoon, Izmir Bay, Turkey

(2015) Sefa Acarli et al.   SCIENTIA MARINA

Candidate Gene Polymorphisms and their Association with Glycogen Content in the Pacific Oyster Crassostrea gigas

(2015) Zhicai She et al.   PLoS One

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Directional selection can drive the evolution of modularity in complex traits

(2014) Diogo Melo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Splice Mutation in the PHKG1 Gene Causes High Glycogen Content and Low Meat Quality in Pig Skeletal Muscle

(2014) Junwu Ma et al.   PLoS Genetics

Genome-wide association testing reveals quantitative trait loci for fillet texture and fat content in Atlantic salmon

(2013) Marte Sodeland et al.   AQUACULTURE

Sequencing-based genome-wide association study in rice

(2013) Bin Han et al.   CURRENT OPINION IN PLANT BIOLOGY

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

Mapping Quantitative Trait Loci for Omega-3 Fatty Acids in Asian Seabass

(2013) Jun Hong Xia et al.   MARINE BIOTECHNOLOGY

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Selection of representative SNP sets for genome-wide association studies: a metaheuristic approach

(2011) Gürkan Üstünkar et al.   Optimization Letters

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome-wide association study for calving traits in Danish and Swedish Holstein cattle

(2010) G. Sahana et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population

(2010) Li Jiang et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Combining Two-Stage Testing and Interval Mapping Strategies to Detect QTL for Resistance to Bonamiosis in the European Flat Oyster Ostrea edulis

(2009) D. Lallias et al.   MARINE BIOTECHNOLOGY

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design

(2009) S. Myles et al.   PLANT CELL

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS