A Novel Cys2His2 Zinc Finger Homolog of AZF1 Modulates Holocellulase Expression in Trichoderma reesei

Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse

(2018) Paula Fagundes de Gouvêa et al.   BMC GENOMICS

Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Response to Sophorose Through RNA Sequencing Analysis

(2016) Amanda Cristina Campos Antoniêto et al.   CURRENT GENOMICS

Recent Progress on Systems and Synthetic Biology Approaches to Engineer Fungi As Microbial Cell Factories

(2016) Gerardo Amores et al.   CURRENT GENOMICS

Diverse Regulation of the CreA Carbon Catabolite Repressor in Aspergillus nidulans

(2016) Laure N. A. Ries et al.   GENETICS

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis

(2016) Lilian dos Santos Castro et al.   Frontiers in Microbiology

Diverse Regulation of the CreA Carbon Catabolite Repressor in Aspergillus nidulans

(2016) Laure N. A. Ries et al.   GENETICS

Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei

(2015) Christian Derntl et al.   Biotechnology for Biofuels

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Direct Target Network of the Neurospora crassa Plant Cell Wall Deconstruction Regulators CLR-1, CLR-2, and XLR-1

(2015) James P. Craig et al.   mBio

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses

(2014) Lilian dos Santos Castro et al.   Biotechnology for Biofuels

Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei

(2014) Lilian dos Santos Castro et al.   GENE EXPRESSION PATTERNS

Deciphering the Cis-Regulatory Elements for XYR1 and CRE1 Regulators in Trichoderma reesei

(2014) Rafael Silva-Rocha et al.   PLoS One

The VELVET A Orthologue VEL1 of Trichoderma reesei Regulates Fungal Development and Is Essential for Cellulase Gene Expression

(2014) Razieh Karimi Aghcheh et al.   PLoS One

ChIP-seq and In Vivo Transcriptome Analyses of the Aspergillus fumigatus SREBP SrbA Reveals a New Regulator of the Fungal Hypoxia Response and Virulence

(2014) Dawoon Chung et al.   PLoS Pathogens

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction

(2013) Elizabeth A Znameroski et al.   Biotechnology for Biofuels

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production

(2013) Neil Brown et al.   Biotechnology for Biofuels

Regulation of Cellulase and Hemicellulase Gene Expression in Fungi

(2013) Antonella Amore et al.   CURRENT GENOMICS

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

(2013) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbens

(2013) Guodong Liu et al.   PLoS One

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

(2012) Andre Schuster et al.   Biotechnology for Biofuels

Deciphering Transcriptional Regulatory Mechanisms Associated with Hemicellulose Degradation in Neurospora crassa

(2012) Jianping Sun et al.   EUKARYOTIC CELL

Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse

(2011) Wagner R de Souza et al.   Biotechnology for Biofuels

Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals

(2011) Shishir P.S. Chundawat et al.   Annual Review of Chemical and Biomolecular Engineering

An overview of second generation biofuel technologies

(2009) Ralph E.H. Sims et al.   BIORESOURCE TECHNOLOGY

The G-Alpha Protein GNA3 ofHypocrea jecorina(AnamorphTrichoderma reesei) Regulates Cellulase Gene Expression in the Presence of Light

(2009) Monika Schmoll et al.   EUKARYOTIC CELL

Transcriptional Regulation of xyr1, Encoding the Main Regulator of the Xylanolytic and Cellulolytic Enzyme System in Hypocrea jecorina

(2008) A. R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal secretomes—nature’s toolbox for white biotechnology

(2008) Henning Bouws et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY