Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis

Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Response to Sophorose Through RNA Sequencing Analysis

(2016) Amanda Cristina Campos Antoniêto et al.   CURRENT GENOMICS

Structural Biology of the Major Facilitator Superfamily Transporters

(2015) Nieng Yan   Annual Review of Biophysics

Functional Characterization of Corynebacterium alkanolyticum β-Xylosidase and Xyloside ABC Transporter in Corynebacterium glutamicum

(2015) Akira Watanabe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

(2015) Alexander Lichius et al.   BMC GENOMICS

Proteins for Breaking Barriers in Lignocellulosic Bioethanol Production

(2015) Kandasamy Ulaganathan et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

(2015) Magnus Karlsson et al.   Genome Biology and Evolution

Utilization of recombinant Trichoderma reesei expressing Aspergillus aculeatus β-glucosidase I (JN11) for a more economical production of ethanol from lignocellulosic biomass

(2015) Treesukon Treebupachatsakul et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Characterization of the Dielectric Constant in the Trichoderma reesei Cel7B Active Site

(2015) Xiangfei Song et al.   Journal of Chemical Information and Modeling

Enhancing xylanase production in the thermophilic fungus Myceliophthora thermophila by homologous overexpression of Mtxyr1

(2015) Juan Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum

(2015) Zhonghai Li et al.   PLoS Genetics

Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass

(2015) Gustavo Pagotto Borin et al.   PLoS One

Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi

(2014) Shuji Tani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Effect of multiple short highly energetic X-ray pulses on the synthesis of endoglucanase by a mutant strain ofTrichoderma reesei-M7

(2014) Orlin Gemishev et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses

(2014) Lilian dos Santos Castro et al.   Biotechnology for Biofuels

Functional characterization of a xylose transporter in Aspergillus nidulans

(2014) Ana Colabardini et al.   Biotechnology for Biofuels

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

(2014) Mari Häkkinen et al.   Biotechnology for Biofuels

Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis

(2014) Amanda Cristina Campos Antoniêto et al.   FUNGAL GENETICS AND BIOLOGY

Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi

(2014) Sylvia Klaubauf et al.   FUNGAL GENETICS AND BIOLOGY

Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei

(2014) Lilian dos Santos Castro et al.   GENE EXPRESSION PATTERNS

The Putative Cellodextrin Transporter-like Protein CLP1 Is Involved in Cellulase Induction inNeurospora crassa

(2014) Pengli Cai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nucleo-cytoplasmic shuttling dynamics of the transcriptional regulators XYR1 and CRE1 under conditions of cellulase and xylanase gene expression inTrichoderma reesei

(2014) Alexander Lichius et al.   MOLECULAR MICROBIOLOGY

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Deciphering the Cis-Regulatory Elements for XYR1 and CRE1 Regulators in Trichoderma reesei

(2014) Rafael Silva-Rocha et al.   PLoS One

MYT3, A Myb-Like Transcription Factor, Affects Fungal Development and Pathogenicity of Fusarium graminearum

(2014) Yongsoo Kim et al.   PLoS One

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Identification of Major Facilitator Transporters Involved in Cellulase Production during Lactose Culture ofTrichoderma reeseiPC-3-7

(2013) Juliano de Oliveira PORCIUNCULA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Transcriptional regulation of flavonoid biosynthesis in nectarine (Prunus persica) by a set of R2R3 MYB transcription factors

(2013) Daniela Ravaglia et al.   BMC PLANT BIOLOGY

Regulation of Cellulase and Hemicellulase Gene Expression in Fungi

(2013) Antonella Amore et al.   CURRENT GENOMICS

Contributions of Aspergillus fumigatus ATP-Binding Cassette Transporter Proteins to Drug Resistance and Virulence

(2013) Sanjoy Paul et al.   EUKARYOTIC CELL

Xylanase Gene Transcription in Trichoderma reesei Is Triggered by Different Inducers Representing Different Hemicellulosic Pentose Polymers

(2013) Silvia Herold et al.   EUKARYOTIC CELL

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in d-xylose, l-arabinose and steam-exploded sugarcane bagasse

(2013) Wagner Rodrigo de Souza et al.   FUNGAL GENETICS AND BIOLOGY

Xlr1 is involved in the transcriptional control of the pentose catabolic pathway, but not hemi-cellulolytic enzymes in Magnaporthe oryzae

(2013) Evy Battaglia et al.   FUNGAL GENETICS AND BIOLOGY

Two Major Facilitator Superfamily Sugar Transporters fromTrichoderma reeseiand Their Roles in Induction of Cellulase Biosynthesis

(2013) Weixin Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systems Analysis of Lactose Metabolism in Trichoderma reesei Identifies a Lactose Permease That Is Essential for Cellulase Induction

(2013) Christa Ivanova et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Novel enzymes for the degradation of cellulose

(2012) Svein Horn et al.   Biotechnology for Biofuels

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Deciphering Transcriptional Regulatory Mechanisms Associated with Hemicellulose Degradation in Neurospora crassa

(2012) Jianping Sun et al.   EUKARYOTIC CELL

Morphogenetic Circuitry Regulating Growth and Development in the Dimorphic Pathogen Penicillium marneffei

(2012) Kylie J. Boyce et al.   EUKARYOTIC CELL

FlbD, a Myb Transcription Factor of Aspergillus nidulans, Is Uniquely Involved in both Asexual and Sexual Differentiation

(2012) Jenny Arratia-Quijada et al.   EUKARYOTIC CELL

The major facilitator superfamily (MFS) revisited

(2012) Vamsee S. Reddy et al.   FEBS Journal

Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans

(2012) Erzsébet Fekete et al.   FUNGAL GENETICS AND BIOLOGY

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

(2012) Mari Häkkinen et al.   Microbial Cell Factories

A Myb Transcription Factor of Phytophthora sojae, Regulated by MAP Kinase PsSAK1, Is Required for Zoospore Development

(2012) Meng Zhang et al.   PLoS One

Structural Basis for Substrate Targeting and Catalysis by Fungal Polysaccharide Monooxygenases

(2012) Xin Li et al.   STRUCTURE

CELLULOSE DEGRADATION BY OXIDATIVE ENZYMES

(2012) Maria Dimarogona et al.   Computational and Structural Biotechnology Journal

Oxidoreductive Cellulose Depolymerization by the Enzymes Cellobiose Dehydrogenase and Glycoside Hydrolase 61

(2011) James A. Langston et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oxidative Cleavage of Cellulose by Fungal Copper-Dependent Polysaccharide Monooxygenases

(2011) William T. Beeson et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components

(2011) R. J. Quinlan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The R2R3 Myb protein family in Entamoeba histolytica

(2010) Eric Meneses et al.   GENE

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Biochemical and molecular characterization of plant MYB transcription factor family

(2009) Hai Du et al.   BIOCHEMISTRY-MOSCOW

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina

(2009) Christian P Kubicek et al.   Biotechnology for Biofuels

The G-Alpha Protein GNA3 ofHypocrea jecorina(AnamorphTrichoderma reesei) Regulates Cellulase Gene Expression in the Presence of Light

(2009) Monika Schmoll et al.   EUKARYOTIC CELL

Hexose and pentose transport in ascomycetous yeasts: an overview

(2009) Maria José Leandro et al.   FEMS YEAST RESEARCH

Regulation of multidrug resistance in pathogenic fungi

(2009) Joachim Morschhäuser   FUNGAL GENETICS AND BIOLOGY

An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei)

(2009) Matthias G. Steiger et al.   JOURNAL OF BIOTECHNOLOGY

Identification of a New Biocontrol Gene inTrichoderma atroviride: The Role of an ABC Transporter Membrane Pump in the Interaction with Different Plant-Pathogenic Fungi

(2009) Michelina Ruocco et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcriptional Regulation of xyr1, Encoding the Main Regulator of the Xylanolytic and Cellulolytic Enzyme System in Hypocrea jecorina

(2008) A. R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei)

(2008) Astrid R. Stricker et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Structure, Function, and Evolution of Bacterial ATP-Binding Cassette Systems

(2008) A. L. Davidson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Drug:H+ antiporters in chemical stress response in yeast

(2008) Isabel Sá-Correia et al.   TRENDS IN MICROBIOLOGY