ChIP-seq and In Vivo Transcriptome Analyses of the Aspergillus fumigatus SREBP SrbA Reveals a New Regulator of the Fungal Hypoxia Response and Virulence
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
ChIP-seq and In Vivo Transcriptome Analyses of the Aspergillus fumigatus SREBP SrbA Reveals a New Regulator of the Fungal Hypoxia Response and Virulence
Authors
Keywords
-
Journal
PLoS Pathogens
Volume 10, Issue 11, Pages e1004487
Publisher
Public Library of Science (PLoS)
Online
2014-11-07
DOI
10.1371/journal.ppat.1004487
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Modeling the Transcriptional Regulatory Network That Controls the Early Hypoxic Response in Candida albicans
- (2014) Adnane Sellam et al. EUKARYOTIC CELL
- Hypoxia and Gene Expression in Eukaryotic Microbes
- (2013) Geraldine Butler Annual Review of Microbiology
- Mapping Yeast Transcriptional Networks
- (2013) T. R. Hughes et al. GENETICS
- Subunit Architecture of the Golgi Dsc E3 Ligase Required for Sterol Regulatory Element-binding Protein (SREBP) Cleavage in Fission Yeast
- (2013) S. Julie-Ann Lloyd et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural Requirements for Sterol Regulatory Element-binding Protein (SREBP) Cleavage in Fission Yeast
- (2013) Rocky Cheung et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Aspergillus fumigatus Invasion Increases with Progressive Airway Ischemia
- (2013) Joe L. Hsu et al. PLoS One
- Candida albicans Commensalism and Pathogenicity Are Intertwined Traits Directed by a Tightly Knit Transcriptional Regulatory Circuit
- (2013) J. Christian Pérez et al. PLOS BIOLOGY
- Are We There Yet? Recent Progress in the Molecular Diagnosis and Novel Antifungal Targeting of Aspergillus fumigatus and Invasive Aspergillosis
- (2013) William J. Steinbach PLoS Pathogens
- A Comprehensive Functional Portrait of Two Heat Shock Factor-Type Transcriptional Regulators Involved in Candida albicans Morphogenesis and Virulence
- (2013) Sadri Znaidi et al. PLoS Pathogens
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter
- (2012) Bridget M Barker et al. BMC GENOMICS
- Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach
- (2012) Jörg Linde et al. BMC Systems Biology
- A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans
- (2012) Clarissa J. Nobile et al. CELL
- Expanding Roles for SREBP in Metabolism
- (2012) Wei Shao et al. Cell Metabolism
- Hypoxia and Fungal Pathogenesis: To Air or Not To Air?
- (2012) Nora Grahl et al. EUKARYOTIC CELL
- Dsc Orthologs Are Required for Hypoxia Adaptation, Triazole Drug Responses, and Fungal Virulence in Aspergillus fumigatus
- (2012) Sven D. Willger et al. EUKARYOTIC CELL
- Regulation of SREBP during hypoxia requires Ofd1-mediated control of both DNA bindingand degradation
- (2012) Joshua R. Porter et al. MOLECULAR BIOLOGY OF THE CELL
- RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
- (2012) M. Lohse et al. NUCLEIC ACIDS RESEARCH
- Tackling Human Fungal Infections
- (2012) G. D. Brown et al. SCIENCE
- Hidden Killers: Human Fungal Infections
- (2012) G. D. Brown et al. Science Translational Medicine
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Genome-wide Localization of SREBP-2 in Hepatic Chromatin Predicts a Role in Autophagy
- (2011) Young-Kyo Seo et al. Cell Metabolism
- The hypoxia–inflammation link and potential drug targets
- (2011) Michael Koeppen et al. Current Opinion in Anesthesiology
- SclR, a Basic Helix-Loop-Helix Transcription Factor, Regulates Hyphal Morphology and Promotes Sclerotial Formation in Aspergillus oryzae
- (2011) Feng Jie Jin et al. EUKARYOTIC CELL
- Yeast Sterol Regulatory Element-binding Protein (SREBP) Cleavage Requires Cdc48 and Dsc5, a Ubiquitin Regulatory X Domain-containing Subunit of the Golgi Dsc E3 Ligase
- (2011) Emerson V. Stewart et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Phylogenetic Analysis and Classification of the Fungal bHLH Domain
- (2011) J. K. Sailsbery et al. MOLECULAR BIOLOGY AND EVOLUTION
- Hypoxia and Inflammation
- (2011) Holger K. Eltzschig et al. NEW ENGLAND JOURNAL OF MEDICINE
- SREBP Coordinates Iron and Ergosterol Homeostasis to Mediate Triazole Drug and Hypoxia Responses in the Human Fungal Pathogen Aspergillus fumigatus
- (2011) Michael Blatzer et al. PLoS Genetics
- In vivo Hypoxia and a Fungal Alcohol Dehydrogenase Influence the Pathogenesis of Invasive Pulmonary Aspergillosis
- (2011) Nora Grahl et al. PLoS Pathogens
- Improving RNA-Seq expression estimates by correcting for fragment bias
- (2011) Adam Roberts et al. GENOME BIOLOGY
- Adaptations of Candida albicans for Growth in the Mammalian Intestinal Tract
- (2010) Ari Rosenbach et al. EUKARYOTIC CELL
- The Small GTPase RacA Mediates Intracellular Reactive Oxygen Species Production, Polarized Growth, and Virulence in the Human Fungal Pathogen Aspergillus fumigatus
- (2010) Haiyan Li et al. EUKARYOTIC CELL
- Sterol Regulatory Element Binding Proteins in Fungi: Hypoxic Transcription Factors Linked to Pathogenesis
- (2010) Clara M. Bien et al. EUKARYOTIC CELL
- Functional analysis and subcellular location of two flavohemoglobins from Aspergillus oryzae
- (2010) Shengmin Zhou et al. FUNGAL GENETICS AND BIOLOGY
- FungiFun: A web-based application for functional categorization of fungal genes and proteins
- (2010) Steffen Priebe et al. FUNGAL GENETICS AND BIOLOGY
- Ergosterol Regulates Sterol Regulatory Element Binding Protein (SREBP) Cleavage in Fission Yeast
- (2010) Joshua R. Porter et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Regulation of hypoxia adaptation: an overlooked virulence attribute of pathogenic fungi?
- (2010) Nora Grahl et al. MEDICAL MYCOLOGY
- Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
- (2010) D. Schmidt et al. SCIENCE
- Conservation of the Sterol Regulatory Element-Binding Protein Pathway and Its Pathobiological Importance inCryptococcus neoformans
- (2009) Yun C. Chang et al. EUKARYOTIC CELL
- Degradation of Sterol Regulatory Element-binding Protein Precursor Requires the Endoplasmic Reticulum-associated Degradation Components Ubc7 and Hrd1 in Fission Yeast
- (2009) Bridget T. Hughes et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Time Course Global Gene Expression Analysis of an In VivoCandidaBiofilm
- (2009) Jeniel E. Nett et al. JOURNAL OF INFECTIOUS DISEASES
- Aspergillus fumigatusmetabolism: Clues to mechanisms ofin vivofungal growth and virulence
- (2009) Sven D. Willger et al. MEDICAL MYCOLOGY
- Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif
- (2009) Y.-K. Seo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Bioluminescent Aspergillus fumigatus, a New Tool for Drug Efficiency Testing and In Vivo Monitoring of Invasive Aspergillosis
- (2008) M. Brock et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Responses to hypoxia in fungal pathogens
- (2008) Joachim F. Ernst et al. CELLULAR MICROBIOLOGY
- SreA-mediated iron regulation in Aspergillus fumigatus
- (2008) Markus Schrettl et al. MOLECULAR MICROBIOLOGY
- Functional characterization of the Aspergillus fumigatus CRZ1 homologue, CrzA
- (2008) Frederico Marianetti Soriani et al. MOLECULAR MICROBIOLOGY
- Direct multiplexed measurement of gene expression with color-coded probe pairs
- (2008) Gary K Geiss et al. NATURE BIOTECHNOLOGY
- A large genome center's improvements to the Illumina sequencing system
- (2008) Michael A Quail et al. NATURE METHODS
- The Evolution of Combinatorial Gene Regulation in Fungi
- (2008) Brian B Tuch et al. PLOS BIOLOGY
- Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes
- (2008) Brian D. Reed et al. PLoS Genetics
- A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus
- (2008) Sven D. Willger et al. PLoS Pathogens
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search