Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbens

A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus

(2012) Emi Kunitake et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei

(2012) Mikiko Nitta et al.   FUNGAL GENETICS AND BIOLOGY

N-Glycoform Diversity of Cellobiohydrolase I fromPenicillium decumbensand Synergism of Nonhydrolytic Glycoform in Cellulose Degradation

(2012) Le Gao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

(2012) S. T. Coradetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellulases fromPenicilliumspecies for producing fuels from biomass

(2012) Alexander V Gusakov et al.   Biofuels-UK

Cellobiose Dehydrogenase and a Copper-Dependent Polysaccharide Monooxygenase Potentiate Cellulose Degradation byNeurospora crassa

(2011) Christopher M. Phillips et al.   ACS Chemical Biology

Purification and characterization of a novel cellobiohydrolase (PdCel6A) from Penicillium decumbens JU-A10 for bioethanol production

(2011) Le Gao et al.   BIORESOURCE TECHNOLOGY

The challenge of enzyme cost in the production of lignocellulosic biofuels

(2011) Daniel Klein-Marcuschamer et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcription analysis of lignocellulolytic enzymes of Penicillium decumbens 114-2 and its catabolite-repression-resistant mutant

(2011) Xiaomin Wei et al.   COMPTES RENDUS BIOLOGIES

Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens

(2011) Liang Ma et al.   ENZYME AND MICROBIAL TECHNOLOGY

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

(2011) Randy M Berka et al.   NATURE BIOTECHNOLOGY

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Microbial enzyme systems for biomass conversion: emerging paradigms

(2011) Michael E Himmel et al.   Biofuels-UK

Podospora anserinaHemicellulases Potentiate theTrichoderma reeseiSecretome for Saccharification of Lignocellulosic Biomass

(2010) Marie Couturier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a highly efficient gene targeting system allowing rapid genetic manipulations in Penicillium decumbens

(2010) Zhong-Hai Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach

(2010) Astrid R Mach-Aigner et al.   BMC GENOMICS

Isolation and characterization of a β-glucosidase from Penicillium decumbens and improving hydrolysis of corncob residue by using it as cellulase supplementation

(2010) Mei Chen et al.   ENZYME AND MICROBIAL TECHNOLOGY

Enzyme-assisted extraction of flavonoids from Ginkgo biloba leaves: Improvement effect of flavonol transglycosylation catalyzed by Penicillium decumbens cellulase

(2010) Shuo Chen et al.   ENZYME AND MICROBIAL TECHNOLOGY

SMURF: Genomic mapping of fungal secondary metabolite clusters

(2010) Nora Khaldi et al.   FUNGAL GENETICS AND BIOLOGY

Characterization of the endoglucanase and glucomannanase activities of a glycoside hydrolase family 45 protein from Penicillium decumbens 114-2

(2010) Guodong Liu et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Status and prospect of lignocellulosic bioethanol production in China

(2009) Xu Fang et al.   BIORESOURCE TECHNOLOGY

High concentration ethanol production from corncob residues by fed-batch strategy

(2009) Kai Liu et al.   BIORESOURCE TECHNOLOGY

Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina

(2009) Christian P Kubicek et al.   Biotechnology for Biofuels

Genome shuffling improves production of cellulase byPenicillium decumbensJU-A10

(2009) Y. Cheng et al.   JOURNAL OF APPLIED MICROBIOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the peptidase database

(2009) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

SHRiMP: Accurate Mapping of Short Color-space Reads

(2009) Stephen M. Rumble et al.   PLoS Computational Biology

Telomere Organization in the Ligninolytic Basidiomycete Pleurotus ostreatus

(2008) G. Perez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

(2008) J. Park et al.   BIOINFORMATICS

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Lignocellulosic residues: Biodegradation and bioconversion by fungi

(2008) Carmen Sánchez   BIOTECHNOLOGY ADVANCES

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains

(2008) Isabelle Herpoël-Gimbert et al.   Biotechnology for Biofuels

The composition of basal and induced cellulase systems in Penicillium decumbens under induction or repression conditions

(2008) Xianyun Sun et al.   ENZYME AND MICROBIAL TECHNOLOGY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

How biotech can transform biofuels

(2008) Lee R Lynd et al.   NATURE BIOTECHNOLOGY

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum

(2008) Marco A van den Berg et al.   NATURE BIOTECHNOLOGY

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Simultaneous saccharification and fermentation of acid-pretreated corncobs with a recombinant Saccharomyces cerevisiae expressing β-glucosidase

(2007) Yu Shen et al.   BIORESOURCE TECHNOLOGY