Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse

Fungal lytic polysaccharide monooxygenases from family AA9: Recent developments and application in lignocelullose breakdown

(2017) Antonielle Vieira Monclaro et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Xyloglucan breakdown by endo-xyloglucanase family 74 from Aspergillus fumigatus

(2016) André Ricardo de Lima Damasio et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biological pretreatment of lignocellulosic biomass – An overview

(2016) Raveendran Sindhu et al.   BIORESOURCE TECHNOLOGY

Genetic modification of plant cell walls to enhance biomass yield and biofuel production in bioenergy crops

(2016) Yanting Wang et al.   BIOTECHNOLOGY ADVANCES

Identification and characterization of putative xylose and cellobiose transporters in Aspergillus nidulans

(2016) Thaila Fernanda dos Reis et al.   Biotechnology for Biofuels

Cell wall proteome of sugarcane stems: comparison of a destructive and a non-destructive extraction method showed differences in glycoside hydrolases and peroxidases

(2016) Maria Juliana Calderan-Rodrigues et al.   BMC PLANT BIOLOGY

Insight into Enzymatic Degradation of Corn, Wheat, and Soybean Cell Wall Cellulose Using Quantitative Secretome Analysis of Aspergillus fumigatus

(2016) Prakriti Sharma Ghimire et al.   JOURNAL OF PROTEOME RESEARCH

Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass

(2016) Hévila Brognaro dos Santos et al.   AMB Express

Improving xylitol production at elevated temperature with engineered Kluyveromyces marxianus through over-expressing transporters

(2015) Jia Zhang et al.   BIORESOURCE TECHNOLOGY

One-Pot dry chemo-mechanical deconstruction for bioethanol production from sugarcane bagasse

(2015) C. Sambusiti et al.   BIORESOURCE TECHNOLOGY

Production of fermentable sugars from sugarcane bagasse by enzymatic hydrolysis after autohydrolysis and mechanical refining

(2015) Larisse Aparecida Ribas Batalha et al.   BIORESOURCE TECHNOLOGY

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

(2015) Isabelle Benoit et al.   Biotechnology for Biofuels

2G ethanol from the whole sugarcane lignocellulosic biomass

(2015) Sandra Pereira et al.   Biotechnology for Biofuels

Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes

(2015) Youzhi Miao et al.   BMC GENOMICS

Fungal Cellulases

(2015) Christina M. Payne et al.   CHEMICAL REVIEWS

Lignocellulose degradation mechanisms across the Tree of Life

(2015) Simon M Cragg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Expression and specificity profile of the major acetate transporter AcpA in Aspergillus nidulans

(2015) Joana Sá-Pessoa et al.   FUNGAL GENETICS AND BIOLOGY

Quantitative proteomic study of Aspergillus Fumigatus secretome revealed deamidation of secretory enzymes

(2015) Sunil S. Adav et al.   Journal of Proteomics

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Transcriptome Analysis of Two Sugarcane Genotypes Contrasting for Lignin Content

(2015) Renato Vicentini et al.   PLoS One

Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass

(2015) Gustavo Pagotto Borin et al.   PLoS One

Breaking the “Glycomic Code” of Cell Wall Polysaccharides May Improve Second-Generation Bioenergy Production from Biomass

(2014) Marcos S. Buckeridge et al.   BioEnergy Research

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Functional characterization of a xylose transporter in Aspergillus nidulans

(2014) Ana Colabardini et al.   Biotechnology for Biofuels

Genomics Review of Holocellulose Deconstruction by Aspergilli

(2014) Fernando Segato et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evidence of a Critical Role for Cellodextrin Transporte 2 (CDT-2) in Both Cellulose and Hemicellulose Degradation and Utilization in Neurospora crassa

(2014) Pengli Cai et al.   PLoS One

Transcriptome Profile of Trichoderma harzianum IOC-3844 Induced by Sugarcane Bagasse

(2014) Maria Augusta Crivelente Horta et al.   PLoS One

Importance of chemical pretreatment for bioconversion of lignocellulosic biomass

(2014) Shuvashish Behera et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Comparative secretome analysis of Trichoderma asperellum S4F8 and Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse

(2013) Isa Marx et al.   Biotechnology for Biofuels

Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources

(2013) Dongyang Liu et al.   Biotechnology for Biofuels

Physiological and molecular aspects of degradation of plant polysaccharides by fungi: What have we learned fromAspergillus?

(2013) Helena Culleton et al.   Biotechnology Journal

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

(2013) Diane O Inglis et al.   BMC MICROBIOLOGY

Fungal degradation of lignocellulosic residues: An aspect of improved nutritive quality

(2013) Rakesh Kumar Sharma et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Regulation of Cellulase and Hemicellulase Gene Expression in Fungi

(2013) Antonella Amore et al.   CURRENT GENOMICS

TheAspergillusGenome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

(2013) Gustavo C. Cerqueira et al.   NUCLEIC ACIDS RESEARCH

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Plant cell walls to ethanol

(2012) Douglas B. Jordan et al.   BIOCHEMICAL JOURNAL

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Three lignocellulose features that distinctively affect biomass enzymatic digestibility under NaOH and H2SO4 pretreatments in Miscanthus

(2012) Wei Zhang et al.   BIORESOURCE TECHNOLOGY

A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover

(2012) Sayali Saykhedkar et al.   Biotechnology for Biofuels

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger

(2012) Min Jin Kwon et al.   BMC GENOMICS

Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans

(2012) Erzsébet Fekete et al.   FUNGAL GENETICS AND BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Penicillium echinulatum Secretome on Sugar Cane Bagasse

(2012) Daniela A. Ribeiro et al.   PLoS One

Fungal enzyme sets for plant polysaccharide degradation

(2011) Joost van den Brink et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse

(2011) Wagner R de Souza et al.   Biotechnology for Biofuels

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Status and barriers of advanced biofuel technologies: A review

(2011) Jay J. Cheng et al.   RENEWABLE ENERGY

Going from where to why—interpretable prediction of protein subcellular localization

(2010) Sebastian Briesemeister et al.   BIOINFORMATICS

Seed Cell Wall Storage Polysaccharides: Models to Understand Cell Wall Biosynthesis and Degradation

(2010) M. S. Buckeridge   PLANT PHYSIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae

(2009) Yuji Noguchi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

(2009) Thomas R Jørgensen et al.   BMC GENOMICS

Reconstruction of Signaling Networks Regulating Fungal Morphogenesis by Transcriptomics

(2009) Vera Meyer et al.   EUKARYOTIC CELL

Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis

(2009) Margarita Salazar et al.   MOLECULAR GENETICS AND GENOMICS

Evidence that family 35 carbohydrate binding modules display conserved specificity but divergent function

(2009) C. Montanier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains

(2008) Isabelle Herpoël-Gimbert et al.   Biotechnology for Biofuels

Current status of systems biology in Aspergilli

(2008) M.R. Andersen et al.   FUNGAL GENETICS AND BIOLOGY

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation

(2007) Koichi Tamano et al.   FUNGAL GENETICS AND BIOLOGY