Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis

Expression of homing endonuclease gene and insertion-like element in sea anemone mitochondrial genomes: Lesson learned from Anemonia viridis

(2018) Sylvia Ighem Chi et al.   GENE

Elucidating the Small Regulatory RNA Repertoire of the Sea Anemone Anemonia viridis Based on Whole Genome and Small RNA Sequencing

(2018) Ilona Urbarova et al.   Genome Biology and Evolution

Functional genomic analysis of corals from natural CO2 -seeps reveals core molecular responses involved in acclimatization to ocean acidification

(2017) Carly D. Kenkel et al.   GLOBAL CHANGE BIOLOGY

Spatial competition dynamics between reef corals under ocean acidification

(2017) Rael Horwitz et al.   Scientific Reports

Dynamics of carbonate chemistry, production, and calcification of the Florida Reef Tract (2009-2010): Evidence for seasonal dissolution

(2016) Nancy Muehllehner et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Resilience to ocean acidification: decreased carbonic anhydrase activity in sea anemones under high pCO2 conditions

(2016) P Ventura et al.   MARINE ECOLOGY PROGRESS SERIES

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

Resilience to ocean acidification: decreased carbonic anhydrase activity in sea anemones under high pCO2 conditions

(2016) P Ventura et al.   MARINE ECOLOGY PROGRESS SERIES

Study of Cnidarian-Algal Symbiosis in the “Omics” Age

(2016) Eli Meyer et al.   BIOLOGICAL BULLETIN

Dissecting molecular cross-talk between Nrf2 and NF-κB response pathways

(2015) Joanna D. Wardyn et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Ocean acidification through the lens of ecological theory

(2015) Brian Gaylord et al.   ECOLOGY

Calcification is not the Achilles’ heel of cold-water corals in an acidifying ocean

(2015) Riccardo Rodolfo-Metalpa et al.   GLOBAL CHANGE BIOLOGY

Differential carbon utilization and asexual reproduction under elevatedpCO2conditions in the model anemone,Exaiptasia pallida, hosting different symbionts

(2015) Kenneth D. Hoadley et al.   LIMNOLOGY AND OCEANOGRAPHY

Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes

(2015) A. Moya et al.   MOLECULAR ECOLOGY

The genome ofAiptasia, a sea anemone model for coral symbiosis

(2015) Sebastian Baumgarten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hidden impacts of ocean acidification to live and dead coral framework

(2015) S. J. Hennige et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Natural high pCO2 increases autotrophy in Anemonia viridis (Anthozoa) as revealed from stable isotope (C, N) analysis

(2015) Rael Horwitz et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

(2014) Daniel J. Barshis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are Niemann-Pick type C proteins key players in cnidarian-dinoflagellate endosymbioses?

(2014) Vincent Dani et al.   MOLECULAR ECOLOGY

IncreasingpCO2correlates with low concentrations of intracellular dimethylsulfoniopropionate in the sea anemoneAnemonia viridis

(2014) Esther M. Borell et al.   Ecology and Evolution

Role of Nrf2 in Oxidative Stress and Toxicity

(2013) Qiang Ma   Annual Review of Pharmacology and Toxicology

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

Physiological plasticity preserves the metabolic relationship of the intertidal non-calcifying anthozoan-Symbiodinium symbiosis under ocean acidification

(2013) Michael D. Jarrold et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Geochemical survey of Levante Bay, Vulcano Island (Italy), a natural laboratory for the study of ocean acidification

(2013) F. Boatta et al.   MARINE POLLUTION BULLETIN

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Reduced calcification and lack of acclimatization by coral colonies growing in areas of persistent natural acidification

(2013) E. D. Crook et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial community shift from hard to soft corals in acidified water

(2013) Shihori Inoue et al.   Nature Climate Change

Sea anemones may thrive in a high CO2 world

(2012) David J. Suggett et al.   GLOBAL CHANGE BIOLOGY

The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemoneAnemonia viridis

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Future biological and ecosystem impacts of ocean acidification and their socioeconomic-policy implications

(2012) Carol Turley et al.   Current Opinion in Environmental Sustainability

Prolonged exposure to elevated CO2 promotes growth of the algal symbiont Symbiodinium muscatinei in the intertidal sea anemone Anthopleura elegantissima

(2012) T. Towanda et al.   Biology Open

Responses of marine benthic microalgae to elevated CO2

(2011) V. R. Johnson et al.   MARINE BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Differential Responses of the Coral Host and Their Algal Symbiont to Thermal Stress

(2011) William Leggat et al.   PLoS One

Divergent ecosystem responses within a benthic marine community to ocean acidification

(2011) K. J. Kroeker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations

(2011) Katharina E. Fabricius et al.   Nature Climate Change

Coral and mollusc resistance to ocean acidification adversely affected by warming

(2011) R. Rodolfo-Metalpa et al.   Nature Climate Change

Adaptations to Endosymbiosis in a Cnidarian-Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications

(2011) Philippe Ganot et al.   PLoS Genetics

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

(2009) Cécile Sabourault et al.   BMC GENOMICS

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Volcanic carbon dioxide vents show ecosystem effects of ocean acidification

(2008) Jason M. Hall-Spencer et al.   NATURE

From endoplasmic-reticulum stress to the inflammatory response

(2008) Kezhong Zhang et al.   NATURE

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Poorly cemented coral reefs of the eastern tropical Pacific: Possible insights into reef development in a high-CO2 world

(2008) D. P. Manzello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abscisic Acid, High-Light, and Oxidative Stress Down-Regulate a Photosynthetic Gene via a Promoter Motif Not Involved in Phytochrome-Mediated Transcriptional Regulation

(2007) Roberto J. Staneloni et al.   Molecular Plant