Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments
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Title
Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-07-12
DOI
10.1093/nar/gkz616
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Note: Only part of the references are listed.- Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ Ends
- (2018) Erik Holmqvist et al. MOLECULAR CELL
- Small Non-coding RNA RyhB Mediates Persistence to Multiple Antibiotics and Stresses in Uropathogenic Escherichia coli by Reducing Cellular Metabolism
- (2018) Shanshan Zhang et al. Frontiers in Microbiology
- Poly(A) polymerase is required for RyhB sRNA stability and function in Escherichia coli
- (2018) Dhriti Sinha et al. RNA
- PNPase is involved in the coordination of mRNA degradation and expression in stationary phase cells of Escherichia coli
- (2018) Clémentine Dressaire et al. BMC GENOMICS
- Polynucleotide phosphorylase: Not merely an RNase but a pivotal post-transcriptional regulator
- (2018) Todd A. Cameron et al. PLoS Genetics
- Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction
- (2017) Ashley Parker et al. MOLECULAR MICROBIOLOGY
- Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E
- (2016) Shafagh A Waters et al. EMBO JOURNAL
- The Phosphorolytic Exoribonucleases Polynucleotide Phosphorylase and RNase PH Stabilize sRNAs and Facilitate Regulation of Their mRNA Targets
- (2016) Todd A. Cameron et al. JOURNAL OF BACTERIOLOGY
- Global Mapping of Small RNA-Target Interactions in Bacteria
- (2016) Sahar Melamed et al. MOLECULAR CELL
- Endonucleolytic cleavages by RNase E generate the mature 3′ termini of the three proline tRNAs inEscherichia coli
- (2016) Bijoy K. Mohanty et al. NUCLEIC ACIDS RESEARCH
- The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12
- (2016) Ingrid M. Keseler et al. NUCLEIC ACIDS RESEARCH
- C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA
- (2016) Andrew Santiago-Frangos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E
- (2016) Shaheen Sulthana et al. RNA
- The ribonuclease polynucleotide phosphorylase can interact with small regulatory RNAs in both protective and degradative modes
- (2016) Katarzyna J. Bandyra et al. RNA
- Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli
- (2015) Vânia Pobre et al. BMC GENOMICS
- Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition
- (2015) D. J. Schu et al. EMBO JOURNAL
- A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise
- (2015) David Lalaouna et al. MOLECULAR CELL
- Direct observation of processive exoribonuclease motion using optical tweezers
- (2015) Furqan M. Fazal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli
- (2014) Maureen K. Thomason et al. JOURNAL OF BACTERIOLOGY
- Recognition of the small regulatory RNA RydC by the bacterial Hfq protein
- (2014) Daniela Dimastrogiovanni et al. eLife
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- An RNA Degradation Machine Sculpted by Ro Autoantigen and Noncoding RNA
- (2013) Xinguo Chen et al. CELL
- Dual function of the McaS small RNA in controlling biofilm formation
- (2013) M. G. Jorgensen et al. GENES & DEVELOPMENT
- Mutations in Interaction Surfaces Differentially Impact E. coli Hfq Association with Small RNAs and Their mRNA Targets
- (2013) Aixia Zhang et al. JOURNAL OF MOLECULAR BIOLOGY
- Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
- (2013) Kirsten E. Robinson et al. NUCLEIC ACIDS RESEARCH
- An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
- (2012) Yanjie Chao et al. EMBO JOURNAL
- The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E
- (2012) Katarzyna J. Bandyra et al. MOLECULAR CELL
- A complex network of small non-coding RNAs regulate motility inEscherichia coli
- (2012) Nicholas De Lay et al. MOLECULAR MICROBIOLOGY
- A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
- (2012) Maureen K. Thomason et al. MOLECULAR MICROBIOLOGY
- Hfq proximity and orientation controls RNA annealing
- (2012) Subrata Panja et al. NUCLEIC ACIDS RESEARCH
- Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition
- (2012) E. Sauer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- sRNAs and the virulence ofSalmonella entericaserovar Typhimurium
- (2012) Magali Hébrard et al. RNA Biology
- The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
- (2012) J. M. Andrade et al. RNA
- Hfq and its constellation of RNA
- (2011) Jörg Vogel et al. NATURE REVIEWS MICROBIOLOGY
- Role of polynucleotide phosphorylase in sRNA function in Escherichia coli
- (2011) N. De Lay et al. RNA
- Nucleic acid and protein factors involved in Escherichia coli polynucleotide phosphorylase function on RNA
- (2010) Fernando Fernández-Ramírez et al. BIOCHIMIE
- A role for a bacterial ortholog of the Ro autoantigen in starvation-induced rRNA degradation
- (2010) E. J. Wurtmann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations
- (2010) S. Gottesman et al. Cold Spring Harbor Perspectives in Biology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
- (2009) Kyung Moon et al. MOLECULAR MICROBIOLOGY
- Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
- (2009) Verena Pfeiffer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Processing of the Escherichia coli leuX tRNA transcript, encoding tRNALeu5, requires either the 3'->5' exoribonuclease polynucleotide phosphorylase or RNase P to remove the Rho-independent transcription terminator
- (2009) B. K. Mohanty et al. NUCLEIC ACIDS RESEARCH
- Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
- (2009) T. M. Link et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior
- (2008) N. De Lay et al. JOURNAL OF BACTERIOLOGY
- Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
- (2008) Marie Bouvier et al. MOLECULAR CELL
- The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
- (2008) T. J. Soper et al. RNA
- PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
- (2008) J. M. Andrade et al. RNA
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